Query gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62] Match_columns 581 No_of_seqs 197 out of 1773 Neff 8.0 Searched_HMMs 23785 Date Mon May 30 12:07:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780483.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3blc_A Inner membrane protein 100.0 2E-41 1.4E-45 319.3 21.3 277 65-350 31-320 (330) 2 3bs6_A Inner membrane protein 100.0 2.1E-34 9E-39 267.9 22.9 261 67-336 2-275 (280) 3 3dcd_A Galactose mutarotase re 97.3 0.0055 2.3E-07 38.6 11.8 117 70-196 2-138 (307) 4 3nre_A Aldose 1-epimerase; str 96.8 0.029 1.2E-06 33.4 11.8 121 70-196 4-144 (291) 5 2hta_A Putative enzyme related 95.6 0.11 4.8E-06 29.0 9.6 113 69-196 42-174 (309) 6 1snz_A Aldose 1-epimerase; mut 94.9 0.19 8E-06 27.4 10.6 29 68-96 21-49 (344) 7 1lur_A Aldose 1-epimerase; vit 94.1 0.28 1.2E-05 26.2 10.1 29 68-96 12-41 (339) 8 3imh_A Galactose-1-epimerase; 93.5 0.35 1.5E-05 25.4 11.3 28 69-96 19-47 (338) 9 3mwx_A Aldose 1-epimerase; str 91.7 0.59 2.5E-05 23.8 11.1 28 69-96 15-43 (326) 10 3os7_A Galactose mutarotase-li 91.3 0.64 2.7E-05 23.5 10.6 124 68-196 18-180 (341) 11 1nsx_A Galactose mutarotase; e 90.7 0.73 3.1E-05 23.2 11.2 126 68-199 12-170 (347) 12 1jov_A HI1317; hypothetical pr 85.4 1.5 6.3E-05 20.8 7.6 30 67-96 20-49 (270) 13 2cir_A Hexose-6-phosphate muta 73.9 3.4 0.00014 18.2 10.2 113 71-194 13-152 (297) 14 1o7d_D Lysosomal alpha-mannosi 67.4 4.6 0.00019 17.3 3.6 27 70-96 2-28 (282) 15 1yga_A Hypothetical 37.9 kDa p 62.9 5.6 0.00024 16.7 9.8 30 67-96 9-39 (342) 16 1v54_D Cytochrome C oxidase su 58.9 3.3 0.00014 18.4 1.6 31 390-420 31-61 (147) 17 1z45_A GAL10 bifunctional prot 54.8 7.6 0.00032 15.7 4.4 28 69-96 374-402 (699) 18 1e91_A Paired amphipathic heli 41.7 11 0.00045 14.6 1.9 33 395-428 13-47 (85) 19 2f05_A Paired amphipathic heli 36.8 13 0.00056 13.9 1.8 33 395-428 13-47 (105) 20 2cr7_A Paired amphipathic heli 29.6 18 0.00075 13.0 4.5 34 395-428 16-50 (80) 21 1g1e_B SIN3A; four-helix bundl 28.6 19 0.00078 12.9 1.7 31 395-426 16-48 (89) 22 1z65_A PRPLP, prion-like prote 27.6 19 0.00081 12.8 1.5 14 356-369 4-17 (30) 23 3iee_A Putative exported prote 27.1 20 0.00083 12.7 5.3 90 359-452 133-238 (270) 24 2kmu_A ATP-dependent DNA helic 26.4 20 0.00085 12.6 2.5 39 385-423 2-48 (56) 25 3k25_A SLR1438 protein; struct 25.7 21 0.00087 12.5 12.2 122 67-194 10-157 (289) 26 1ybx_A Conserved hypothetical 25.3 21 0.00089 12.5 2.1 21 156-179 67-87 (143) 27 2avu_E Flagellar transcription 23.7 23 0.00095 12.3 1.9 38 412-449 37-85 (192) 28 3h9p_A Putative triphosphoribo 23.0 23 0.00098 12.2 5.0 30 413-444 216-245 (249) 29 1yew_A Particulate methane mon 22.2 24 0.001 12.1 4.1 18 180-197 266-283 (382) No 1 >3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic domain, transmembrane, chaperone; 2.50A {Escherichia coli K12} Probab=100.00 E-value=2e-41 Score=319.26 Aligned_cols=277 Identities=16% Similarity=0.306 Sum_probs=213.8 Q ss_pred CCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCEE Q ss_conf 1458728997664999997699559999953571344788772688545666553100000134787-754333432100 Q gi|254780483|r 65 LSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NIELPNSNTVWN 143 (581) Q Consensus 65 ~~~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~~~p~~~~~~~ 143 (581) ..+++.|+||||+++++||++||+|++++||+|+...+++. ++.|++. +..+.|++.+|++.... +...+..++.|+ T Consensus 31 ~~~~~~itiend~~~~~~ss~GG~I~~~~Lk~y~~~~~~~~-~l~l~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 108 (330) T 3blc_A 31 SGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLET-SPQFIYQAQSGLTGRDGPDNPANGPRPLYN 108 (330) T ss_dssp --CCCEEEEECSSCEEEEETBTCCEEEEEEEEEESSTTCSS-EEEEEEE-CSSCEEEEEEEEESTTCTTSGGGCSCCBCB T ss_pred CCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCC-CEEECCC-CCCCCEEEECCCCCCCCCCCCCCCCCCEEE T ss_conf 67767799988849999989998897998778854447998-5375467-765430111253003686656777652044 Q ss_pred CCCCCC----CCCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCC-----CCCC Q ss_conf 156665----66666504774158842699999716-8835899986315766642224210120256865-----4442 Q gi|254780483|r 144 LISGKI----LTPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQT-----ATNT 213 (581) Q Consensus 144 ~~~~~~----l~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~-----~~~~ 213 (581) ...... ..+...+++++.+++|+.++|+|+++ ++|+++++.+++|.+..++.+.++..+.+..... .... T Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~k~y~~~~~~y~i~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (330) T 3blc_A 109 VEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSN 188 (330) T ss_dssp CSCSEEECCTTCCEEEEEEEEECTTSCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEEEEEEEEESSCCCCC------ T ss_pred ECCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCC T ss_conf 13653672257877369999746996599999973698637999999851667764334101001346676556555553 Q ss_pred C--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEEC Q ss_conf 0--01100000156543210013333333222332346357873110589996078984158998316766410222202 Q gi|254780483|r 214 F--GVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSA 291 (581) Q Consensus 214 ~--~~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~ 291 (581) + ..+.+......++..++..+++.++++.....++.+|+|++||||+++++|+++......... ..+..+.+++.. T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wva~~~kYF~s~lip~~~~~~~~~~~~--~~~~~~~~~~~~ 266 (330) T 3blc_A 189 FALHTFRGAAYSTPDAAYAAYAFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTAN--LGNGIAAIGYKS 266 (330) T ss_dssp ----CCEEEEEECSSCSSCEECHHHHHTTCCCEEEESSCEEEEEESSEEEEEEEESSSCEEEEEEE--EETTEEEEEEEC T ss_pred CEEEECCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEECCCCCCEEEEEE--CCCCEEEEEEEC T ss_conf 102321341277157651342244322123211025674587715657999931688741245540--689616999855 Q ss_pred CCCCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 44445788603678998850002788763220146310123332011035689999999 Q gi|254780483|r 292 NEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLM 350 (581) Q Consensus 292 ~~~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i~kplf~~L 350 (581) +..+++||++.+.++++|+|||+|++|++++.+ ||++||||||+||+||||..+ T Consensus 267 ~~~~l~pg~~~~~~~~~Y~GPk~y~~L~~~~~~-----le~~id~GWf~fIakPlf~~~ 320 (330) T 3blc_A 267 QPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPH-----LDLTVDYGWLWFISQPLLVPR 320 (330) T ss_dssp CCEEECTTCEEEEEEEEEEEECCHHHHHHHSTT-----CCCHHHHHHHHHHTSCCCCCC T ss_pred CCEEECCCCEEEEEEEEEECCCCHHHHHHHHCC-----HHHEEECCCHHHHHHHHEEEC T ss_conf 746878997478998999850819999866509-----211683421988543155066 No 2 >3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Probab=100.00 E-value=2.1e-34 Score=267.95 Aligned_cols=261 Identities=16% Similarity=0.274 Sum_probs=203.1 Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCEECC Q ss_conf 58728997664999997699559999953571344788772688545666553100000134787-75433343210015 Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NIELPNSNTVWNLI 145 (581) Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~~~p~~~~~~~~~ 145 (581) +++.|+||||+++++||++||+|++++||+|+...+.++ ++.|++++ ....|++++++....+ +...+.....|+.. T Consensus 2 ~~~~itvend~~~~~~s~~GG~I~~~~LK~y~~~~~~~~-pv~Ll~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 79 (280) T 3bs6_A 2 QGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETS-PQFIYQAQSGLTGRDGPDNPANGPRPLYNVE 79 (280) T ss_dssp --CEEEEECSSCEEEEETBTTEEEEEEEEEEESSTTCCS-EEEEEEEE-TTEEEEEEEEEESTTCTTSGGGSSCCBCBCS T ss_pred CCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCC-CEEEECCC-CCCCEEEEEEEECCCCCCCCCCCCCCCEEEC T ss_conf 977999989959999989998980888678855437999-75981689-8862378861021443224477765203403 Q ss_pred CCCC----CCCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCC-----CCCCC Q ss_conf 6665----66666504774158842699999716-88358999863157666422242101202568654-----44200 Q gi|254780483|r 146 SGKI----LTPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTA-----TNTFG 215 (581) Q Consensus 146 ~~~~----l~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~~-----~~~~~ 215 (581) .... ..+...++|++.+++|+.++|+|+|. ++|+++++++++|.+..++.+..+..+.+...+.. ...+. T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~k~y~~~~~~Y~v~~~~~v~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (280) T 3bs6_A 80 KDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFA 159 (280) T ss_dssp CSEEECCTTCSEEEEEEEEECTTCCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEEEEEEEEESSCC----------- T ss_pred CCEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 65367426888727999984699849999999649966999999986267775301046898705677644445555311 Q ss_pred --CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCC Q ss_conf --110000015654321001333333322233234635787311058999607898415899831676641022220244 Q gi|254780483|r 216 --VQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANE 293 (581) Q Consensus 216 --~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 293 (581) .+.+.+.+..++.+++.++++..+.......+..+|+|++||||++|+||+++.......... .++.+.+++..+. T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wva~~~kYF~sa~ip~~~~~~~~~~~~~--~~~~~~~~~~~~~ 237 (280) T 3bs6_A 160 LHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANL--GNGIAAIGYKSQP 237 (280) T ss_dssp --CCCEEEEECTTTCCEEECHHHHHTTCCCEEEEESCEEEEEETTEEEEEEEESSSEEEEEEEEE--ETTEEEEEEECCC T ss_pred EEEECCCEEECCCCCCEECCCCCCCCCCCEEEECCCCEEEEECCEEEEEEECCCCCCEEEEEEEC--CCCEEEEEEECCC T ss_conf 00010440333676513513234443442354036527987077799999727987503677526--9970799997574 Q ss_pred CCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 4457886036789988500027887632201463101233320 Q gi|254780483|r 294 ITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDW 336 (581) Q Consensus 294 ~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~ 336 (581) .+++||++.++++++|+|||+|++|++++.+ ||++||- T Consensus 238 ~~l~~~~~~~~~~~lY~GPk~~~~L~~~~~~-----Le~~vD~ 275 (280) T 3bs6_A 238 VLVQPGQTGAMNSTLWVGPEIQDKMAAVAPH-----LDLTVDH 275 (280) T ss_dssp EEECTTCEEEEEEEEEEESCCHHHHHHHSTT-----GGGGTC- T ss_pred EEECCCCEEEEEEEEEECCCCHHHHHHHHCC-----CCCCCCC T ss_conf 6878997689998999841819999877568-----7710987 No 3 >3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Probab=97.31 E-value=0.0055 Score=38.62 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=62.5 Q ss_pred EEEEECCEEEEEEECCCCEEEEEEECCCCC-CCC-CC------CCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCC--- Q ss_conf 289976649999976995599999535713-447-88------7726885456665531000001347877543334--- Q gi|254780483|r 70 RVELKNPSLIGSINLKGAQFDDLNLRGYHL-DVS-SN------SPIVTLLSPSNTKNAYFAELDYVSTANNIELPNS--- 138 (581) Q Consensus 70 ~I~Iend~l~i~is~~GG~I~~~~LK~Y~~-~~~-~d------s~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~--- 138 (581) .++|||+.++++|+..||.|.++..|+-.. -+- .+ ..++ | .|-..+ +..-.+...+....+|.+ T Consensus 2 ~ytl~n~~l~v~v~~~Ga~i~s~~~~~~~~e~l~~~~~~~~~~~~p~-l-fP~~gR---i~~g~~~~~g~~~~l~~HG~~ 76 (307) T 3dcd_A 2 DYTIENNMIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIWGRHAPV-L-FPIVGR---LKNDEYTYKGKTYHLGQHGFA 76 (307) T ss_dssp EEEEECSSEEEEEETBTTEEEEEEETTTCCBCBCCCCTTTCCCSSCE-E-BSCSSC---CGGGEEEETTEEEECCTTBSG T ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCCHHHHCCCCCE-E-EEEECC---CCCCEEEEEEEEEEECCCCCC T ss_conf 89998799999997339399999989999389971887881789978-9-999797---289969886149843668982 Q ss_pred -CCCEECCCCCCCCCCCCCEEEEEC--------CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCC Q ss_conf -321001566656666650477415--------8842699999716883589998631576664222 Q gi|254780483|r 139 -NTVWNLISGKILTPTTPIKLVFKN--------ANNILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581) Q Consensus 139 -~~~~~~~~~~~l~~~~~v~l~~~~--------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581) +..|.+... .+..+++.... .....++.+|+++++ .+.++++++|.++.+..+ T Consensus 77 ~~~~W~v~~~----~~~~~~~~l~~~~~~~~~~P~~~~~~~~~tL~~~-~L~i~~~v~N~~~~~~p~ 138 (307) T 3dcd_A 77 RNADFEVENH----TKESITFLLKDNEETRKVYPFKFEFRVNYNLMNN-LLEENFSVVNKSDETMIF 138 (307) T ss_dssp GGSBCEEEEE----ETTEEEEEEECCHHHHHHSCCCEEEEEEEEEETT-EEEEEEEEEECSSSCEEE T ss_pred CCCEEEEEEC----CCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCC-EEEEEEEEECCCCCCEEE T ss_conf 8840699981----6981499994036623379941899999996798-379999998588852788 No 4 >3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Probab=96.82 E-value=0.029 Score=33.40 Aligned_cols=121 Identities=13% Similarity=0.142 Sum_probs=63.1 Q ss_pred EEEEECCEEEEEEECCCCEEEEEEECCCCCCC---CCC----CCCEEEECCCCCC---CCCEEE---EECCCCCCCCCCC Q ss_conf 28997664999997699559999953571344---788----7726885456665---531000---0013478775433 Q gi|254780483|r 70 RVELKNPSLIGSINLKGAQFDDLNLRGYHLDV---SSN----SPIVTLLSPSNTK---NAYFAE---LDYVSTANNIELP 136 (581) Q Consensus 70 ~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~---~~d----s~~v~Ll~~~~~~---~~y~~~---~G~~~~~~~~~~p 136 (581) .++|+|+.++++|+..||.|.+++.++-. -+ +.+ ....-.+.|-..+ ..|... ..+.........+ T Consensus 4 ~~~l~n~~~~~~v~~~Ga~l~s~~~~g~~-~l~~~~~~~~~~~~~~~~l~P~~gRi~~g~~~~~g~~y~l~~n~~~~~~~ 82 (291) T 3nre_A 4 IYTLSHGSLKLDVSDQGGVIEGFWRDTTP-LLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHY 82 (291) T ss_dssp EEEEEETTEEEEEETBTTEEEEEEETTEE-SSCCCCCSSCGGGSSEEEEBSCCSBCGGGEEEETTEEEECCCCSTTCSSC T ss_pred EEEEECCCEEEEECCCCCEEEEEEECCEE-EEECCCCCCCCCCCCCCEEEEECCCCCCCEEEECCEEEECCCCCCCCCCC T ss_conf 99996699999984279199999999999-99757334555556886798898891799898999999857889998747 Q ss_pred C----CCCCEECCCCCCCCCCCCCEEEEEC---CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCC Q ss_conf 3----4321001566656666650477415---8842699999716883589998631576664222 Q gi|254780483|r 137 N----SNTVWNLISGKILTPTTPIKLVFKN---ANNILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581) Q Consensus 137 ~----~~~~~~~~~~~~l~~~~~v~l~~~~---~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581) . .+..|++... ++..++|+... ..+..++.+|++.++ .+.++++++|.++.+..+ T Consensus 83 ~HG~~~~~~w~v~~~----~~~~v~l~~~~~~~p~~f~l~~~~~L~~~-~L~~~~~v~N~~~~~~p~ 144 (291) T 3nre_A 83 LHGDGWLGEWQCVSH----SDDSLCLVYEHRSGVYHYRVSQAFHLTAD-TLTVTLSVTNQGAETLPF 144 (291) T ss_dssp BSBSGGGSBCEEEEE----CSSEEEEEEEEESSSCEEEEEEEEEECSS-EEEEEEEEEECSSSCEEE T ss_pred CCCCCCCCEEEEEEC----CCCEEEEEEECCCCCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCCE T ss_conf 788833755799983----69968999830469987779999999777-179999998148855261 No 5 >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Probab=95.63 E-value=0.11 Score=29.01 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=57.7 Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCC--------CCCCEEEEECCCCCCCCCCCCC-- Q ss_conf 728997664999997699559999953571344788772688545666--------5531000001347877543334-- Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNT--------KNAYFAELDYVSTANNIELPNS-- 138 (581) Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~--------~~~y~~~~G~~~~~~~~~~p~~-- 138 (581) +.|+|+|+..+++|+..||.|.+++.+.=+ + + |...+.. +..-..-+-|.+......+|.+ T Consensus 42 ~~i~i~~~~~~a~I~l~GA~l~sw~~~~~~-------e-~-Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~~~~~lp~HGF 112 (309) T 2hta_A 42 DLIVVDHPQVKASFALQGAHLLSWKPVGEE-------E-V-LWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGF 112 (309) T ss_dssp EEEEEEETTEEEEEETBTTEEEEEEETTSC-------C-C-BCBCTTCCCCTTCCCSBSBCEEBSCCSSCSSTTCCTTBS T ss_pred CEEEEECCCEEEEEECCCCEEEEEEECCCC-------E-E-EECCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 589997899899998889899899949998-------7-8-977825514699842589837848158898788998866 Q ss_pred --CCCEECCCCCCCCCCCCCEEEEECCC--------CEEEEEEEEECCCCEEEEEEEECCCCCCCCCC Q ss_conf --32100156665666665047741588--------42699999716883589998631576664222 Q gi|254780483|r 139 --NTVWNLISGKILTPTTPIKLVFKNAN--------NILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581) Q Consensus 139 --~~~~~~~~~~~l~~~~~v~l~~~~~~--------g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581) +..|++.......+...++|.....+ ...++.+|++..+ .+++|.+..+..+ T Consensus 113 AR~~~W~l~~~~ed~~~~~l~l~L~~~~~t~~~~Pf~F~l~~~~tL~~~------l~v~N~~~~pmpf 174 (309) T 2hta_A 113 ARNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGKT------CEIELEAHGEFAT 174 (309) T ss_dssp GGGSBCEEEEEEECSSCEEEEEEEECCHHHHHHSCCCCEEEEEEEESSS------EEEEEEEESSEEE T ss_pred EECCCEEEEEECCCCCCEEEEEEECCCCCHHHHCCCCEEEEEEEECCCC------EEEEECCCCCCCC T ss_conf 2156548997427889379999968982034317761899999942751------8999704885102 No 6 >1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Probab=94.87 E-value=0.19 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=26.2 Q ss_pred CCEEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 87289976649999976995599999535 Q gi|254780483|r 68 SPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 68 ~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) .++++++|+.++++|.+.||.|.++.+++ T Consensus 21 v~~~tl~n~~~~v~i~~~GA~i~~~~~~~ 49 (344) T 1snz_A 21 VEKFQLQSDLLRVDIISWGCTITALEVKD 49 (344) T ss_dssp EEEEEEECSSCEEEEETBTTEEEEEEEEC T ss_pred EEEEEEECCCEEEEEECCCCEEEEEEEEC T ss_conf 99999988999999988690999999778 No 7 >1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Probab=94.09 E-value=0.28 Score=26.18 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=26.2 Q ss_pred CCEEEEECCE-EEEEEECCCCEEEEEEECC Q ss_conf 8728997664-9999976995599999535 Q gi|254780483|r 68 SPRVELKNPS-LIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 68 ~~~I~Iend~-l~i~is~~GG~I~~~~LK~ 96 (581) +..|+++|+. ++++|.+.||.|.++.+++ T Consensus 12 ~~~i~l~N~~g~~v~i~~~GA~i~~~~~pd 41 (339) T 1lur_A 12 SGFIEIANKQGLTATLLPFGATLAKLTFPD 41 (339) T ss_dssp CCCEEEECSSSCEEEEETBTTEEEEEEEEC T ss_pred CCEEEEECCCCCEEEEECCCCEEEEEEEEC T ss_conf 756999969995999989692999999888 No 8 >3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm} Probab=93.48 E-value=0.35 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=25.4 Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECC Q ss_conf 728997664-9999976995599999535 Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~ 96 (581) ..|+++|+. ++++|.+.||.|.++.+++ T Consensus 19 ~~~tl~N~~G~~v~i~~~GA~i~~~~~~~ 47 (338) T 3imh_A 19 CEITLENDAGMAVKVLNYGATLEKVLLDG 47 (338) T ss_dssp EEEEEECSSSEEEEEETBTTEEEEEEETT T ss_pred EEEEEECCCCCEEEEECCCCEEEEEEECC T ss_conf 99999979983999987591999999899 No 9 >3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Probab=91.67 E-value=0.59 Score=23.80 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.5 Q ss_pred CEEEEECCEEEEEEEC-CCCEEEEEEECC Q ss_conf 7289976649999976-995599999535 Q gi|254780483|r 69 PRVELKNPSLIGSINL-KGAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~l~i~is~-~GG~I~~~~LK~ 96 (581) +.|++||+.+++++.. .||+|.++..|+ T Consensus 15 ~~i~l~N~~l~~~v~p~~Ga~i~sl~~~~ 43 (326) T 3mwx_A 15 PAIKAGNEHLEMIVVPEWGSNVISLVDKT 43 (326) T ss_dssp EEEEEEESSEEEEEETTTTTEEEEEEETT T ss_pred EEEEEECCCEEEEECHHCCCEEEEEEECC T ss_conf 89999889899997054498999999999 No 10 >3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Probab=91.30 E-value=0.64 Score=23.54 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=60.6 Q ss_pred CCEEEEECCEEEEEEEC-CCCEEEEEEECCCCCCC----CCC--------CC---CEEEECCCCCCCCCEEEEECCCCCC Q ss_conf 87289976649999976-99559999953571344----788--------77---2688545666553100000134787 Q gi|254780483|r 68 SPRVELKNPSLIGSINL-KGAQFDDLNLRGYHLDV----SSN--------SP---IVTLLSPSNTKNAYFAELDYVSTAN 131 (581) Q Consensus 68 ~~~I~Iend~l~i~is~-~GG~I~~~~LK~Y~~~~----~~d--------s~---~v~Ll~~~~~~~~y~~~~G~~~~~~ 131 (581) .+.|+++|+.++++|.. .||+|.+++.+.--..+ ... .+ .+-++.+.+ +.--..+.+ .+. T Consensus 18 ~~~i~l~~~~~~a~v~p~~Ga~i~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~p~l~p~~--Ri~~g~f~~--~G~ 93 (341) T 3os7_A 18 HKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPN--RIDDGTFKL--GDK 93 (341) T ss_dssp EEEEEEEETTEEEEEETTTTTEEEEEEETTTTEECBCCCCTTCCHHHHHHSGGGSSCCEESSCS--EEETTEEEE--TTE T ss_pred CEEEEEEECCEEEEEHHHCCCEEEEEEECCCCCEEEECCCCCCCCHHHCCCCCCCCEEEECCCC--CEECCEEEE--CCE T ss_conf 3899998299999981538989999897899908996555434642221477544617925688--388999999--999 Q ss_pred CCC---------CCC----CCCCEECCCCCCCCCCCCCEEEE--ECC--------CCEEEEEEEEECCCCEEEEEEEECC Q ss_conf 754---------333----43210015666566666504774--158--------8426999997168835899986315 Q gi|254780483|r 132 NIE---------LPN----SNTVWNLISGKILTPTTPIKLVF--KNA--------NNILFERTISLDEHYLFKIVDTVTN 188 (581) Q Consensus 132 ~~~---------~p~----~~~~~~~~~~~~l~~~~~v~l~~--~~~--------~g~~i~kt~t~~~~Y~i~i~~~v~N 188 (581) ... .+. .+..|++.......++..+++++ ... ....++.+|+++++- +.++++++| T Consensus 94 ~y~l~~n~~~~~~~~HG~ar~~~w~v~~~~~~~~~~~v~l~~~~~~~~~~~~~~P~~~~l~~~~~l~~~~-L~~~~~v~N 172 (341) T 3os7_A 94 TYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKG-LKQTTSVVN 172 (341) T ss_dssp EEECCCSBTTTTEEESCSGGGSCCEEEEEEEETTEEEEEEEEEECTTSTTTTTSCCCEEEEEEEEEETTE-EEEEEEEEE T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCC-CEEEEEEEC T ss_conf 9988787899975777884798169888641688856999998079855224798159999999995688-789999972 Q ss_pred CCCCCCCC Q ss_conf 76664222 Q gi|254780483|r 189 NSIDQIRF 196 (581) Q Consensus 189 ~s~~~i~~ 196 (581) .++.+..+ T Consensus 173 ~~~~~~p~ 180 (341) T 3os7_A 173 LSSEEMPL 180 (341) T ss_dssp CSSSCEEE T ss_pred CCCCCEEE T ss_conf 68964675 No 11 >1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Probab=90.70 E-value=0.73 Score=23.16 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=60.5 Q ss_pred CCEEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEE-EEE----------CCCCCCCCCC Q ss_conf 8728997664-999997699559999953571344788772688545666553100-000----------1347877543 Q gi|254780483|r 68 SPRVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFA-ELD----------YVSTANNIEL 135 (581) Q Consensus 68 ~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~-~~G----------~~~~~~~~~~ 135 (581) .+.|+++|+. ++++|.+.||.|.++..++-..-++-++.---+ ....|+- ..| +...+....+ T Consensus 12 ~~~~tL~N~~g~~v~i~~~GA~i~~~~~~~~~vvLg~d~~~~y~-----~~~~~~Ga~iGr~anRI~~g~f~~~G~~y~L 86 (347) T 1nsx_A 12 SDLISLTNKAGVTISFTNLGARIVDWQKDGKHLILGFDSAKEYL-----EKDAYPGATVGPTAGRIKDGLVKISGKDYIL 86 (347) T ss_dssp EEEEEEECTTSCEEEEETBTTEEEEEEETTEESBCCCSSHHHHH-----HTCSCTTCEECSBCSEEGGGEEEETTEEEEC T ss_pred CEEEEEECCCCCEEEEECCCEEEEECCCCCCEEEECCCCHHHHH-----HCCCCCCCEECCCCCEECCCCEEECCEEEEE T ss_conf 26999996998499997889699982469976896699989981-----0788516371550670528805389989991 Q ss_pred C---------C-----CCCCEECCCCCCCCCCCCCEEEEECC-------CCEEEEEEEEECCCCEEEEEEEECCCCCCCC Q ss_conf 3---------3-----43210015666566666504774158-------8426999997168835899986315766642 Q gi|254780483|r 136 P---------N-----SNTVWNLISGKILTPTTPIKLVFKNA-------NNILFERTISLDEHYLFKIVDTVTNNSIDQI 194 (581) Q Consensus 136 p---------~-----~~~~~~~~~~~~l~~~~~v~l~~~~~-------~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i 194 (581) + + ....|.+.... ...+.+|+|++... ..+.++-+|+++++-.+.++++.......++ T Consensus 87 ~~N~~~n~lHGG~~g~~~~~w~~~~~~-~~~~~~v~~~~~~~dg~~GyPg~~~~~vtY~L~~~~~l~i~~~a~~~~~tp~ 165 (347) T 1nsx_A 87 NQNEGPQTLHGGEESIHTKLWTYEVTD-LGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVF 165 (347) T ss_dssp CCCBTTBEETTSTTCGGGSBCEEEEEE-CSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEEESSCEEC T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCEEE T ss_conf 478898765688544454320036662-7875179999975886679757899999999665888999999752776266 Q ss_pred CCCCC Q ss_conf 22421 Q gi|254780483|r 195 RFSPR 199 (581) Q Consensus 195 ~~~~~ 199 (581) .+.+. T Consensus 166 nltnH 170 (347) T 1nsx_A 166 NPTGN 170 (347) T ss_dssp BCEEC T ss_pred ECCCC T ss_conf 61563 No 12 >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Probab=85.44 E-value=1.5 Score=20.85 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=25.9 Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 587289976649999976995599999535 Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) .-+.+.|+|+...++|+..||.|.+++-++ T Consensus 20 ~~~~~~l~~~~~~a~i~~~Ga~l~s~~~~~ 49 (270) T 1jov_A 20 DIPVLHLKHAVGTAKISLQGAQLISWKPQN 49 (270) T ss_dssp TEEEEEEEETTEEEEEETBTTEEEEEEETT T ss_pred CCCEEEEECCCEEEEEECCCCEEEEEEECC T ss_conf 902899947988999989998998999799 No 13 >2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Probab=73.93 E-value=3.4 Score=18.24 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=59.3 Q ss_pred EEEECCEEEEEEECCCCEEEEEEECCCC-------CCCCCCCC---CEEEECCCCCCCCCEEEEECCCC-CCCCCCCCC- Q ss_conf 8997664999997699559999953571-------34478877---26885456665531000001347-877543334- Q gi|254780483|r 71 VELKNPSLIGSINLKGAQFDDLNLRGYH-------LDVSSNSP---IVTLLSPSNTKNAYFAELDYVST-ANNIELPNS- 138 (581) Q Consensus 71 I~Iend~l~i~is~~GG~I~~~~LK~Y~-------~~~~~ds~---~v~Ll~~~~~~~~y~~~~G~~~~-~~~~~~p~~- 138 (581) +.++|+..+++|+..||.+.+++...-. ...+...+ .+-++.|- +|-... +....+|.| T Consensus 13 ~~~~n~~~~a~v~~~Ga~l~s~~~~G~e~l~~~~~a~~~~~~~iRGGiPvlfP~---------~G~~~~~~~~~~lp~HG 83 (297) T 2cir_A 13 THPADETTSVHILKYGATVYSWKLKSEEQLWLSTAAKLDGSKPVRGGIPLVFPV---------FGKNSTDEHLSKLPQHG 83 (297) T ss_dssp EETTEEEEEEEEETBTTEEEEEEETTEECBCBCTTCCCSSSSCCSBSBCEEBSC---------SSCCSSSTTGGGSCTTB T ss_pred ECCCCCCEEEEEECCCCEEEEEEECCEEEEECCCHHHCCCCCCCCCCCEEEEEE---------ECCCCCCCCCCCCCCCC T ss_conf 927999789999768969999988998988338567427999756888598835---------08889898555899862 Q ss_pred ---CCCEECCCCCCCCCCCCCEEEEEC-----------CCCEEEEEEEEECCCCEEEEEEEECCCCC-CCC Q ss_conf ---321001566656666650477415-----------88426999997168835899986315766-642 Q gi|254780483|r 139 ---NTVWNLISGKILTPTTPIKLVFKN-----------ANNILFERTISLDEHYLFKIVDTVTNNSI-DQI 194 (581) Q Consensus 139 ---~~~~~~~~~~~l~~~~~v~l~~~~-----------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~-~~i 194 (581) +..|++..... .+...+++.... .-...++.+|+++++ .+.++.+|+|.++ ++. T Consensus 84 faR~~~W~v~~~~~-~~~~~v~~~L~~~~~~~~t~~~yPf~f~l~~~y~L~~~-~L~~~~~v~N~g~~~~~ 152 (297) T 2cir_A 84 LARNSTWEFLGQTK-ENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSD-YLKTAIEVENTSSSKEL 152 (297) T ss_dssp SGGGSBCEEEEEEE-ETTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECSS-EEEEEEEEECCCSSCCE T ss_pred CEECCCEEEEEEEC-CCCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCE T ss_conf 62665159988641-67761169997357998898208972799999999189-27999999949998424 No 14 >1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Probab=67.37 E-value=4.6 Score=17.33 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.4 Q ss_pred EEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 289976649999976995599999535 Q gi|254780483|r 70 RVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 70 ~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) .|+|||+.++++||...|.+.++.-++ T Consensus 2 di~ieN~~~~l~Fd~~tG~L~si~~~~ 28 (282) T 1o7d_D 2 DLVIQNEYLRARFDPNTGLLMELENLE 28 (282) T ss_dssp CCEEECSSEEEEECTTTCSEEEEEEC- T ss_pred CEEEECCEEEEEEECCCCCEEEEEECC T ss_conf 189967879999969998199999877 No 15 >1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Probab=62.91 E-value=5.6 Score=16.67 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.0 Q ss_pred CCCEEEEECCE-EEEEEECCCCEEEEEEECC Q ss_conf 58728997664-9999976995599999535 Q gi|254780483|r 67 MSPRVELKNPS-LIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 67 ~~~~I~Iend~-l~i~is~~GG~I~~~~LK~ 96 (581) +-+.|+++|+. ++++|.+.||.|.++.+++ T Consensus 9 ~~~~~tl~n~~g~~~~i~~~GA~l~~l~~~~ 39 (342) T 1yga_A 9 KYGVITIGDEKKFQATIAPLGATLVDLKVNG 39 (342) T ss_dssp TTCCEEEEETTTEEEEEETBTTEEEEEEETT T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEEECC T ss_conf 5899999789964999987890999999999 No 16 >1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ... Probab=58.91 E-value=3.3 Score=18.37 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 8778889999973145115678999999985 Q gi|254780483|r 390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420 (581) Q Consensus 390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~ 420 (581) |.+.|++.+|+||=|.|=.+--.+|-.+||+ T Consensus 31 ~e~t~~i~aLreKEKgdWk~LS~eEKkalYr 61 (147) T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYR 61 (147) T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCHHHCCHHHHHHHHH T ss_conf 1279999999998509966579999999999 No 17 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Probab=54.85 E-value=7.6 Score=15.73 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.9 Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECC Q ss_conf 728997664-9999976995599999535 Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~ 96 (581) +.++++|+. ++++|.+.||.|+++.+.+ T Consensus 374 ~~~tl~n~~~~~v~~~~~Ga~i~~~~~~~ 402 (699) T 1z45_A 374 RFVTIGAGTRFQATFANLGASIVDLKVNG 402 (699) T ss_dssp EEEEESTTSSEEEEEESBTTCEEEEEETT T ss_pred EEEEEECCCCEEEEEEECCCEEEEECCCC T ss_conf 79999658847999981685899976199 No 18 >1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A Probab=41.71 E-value=11 Score=14.63 Aligned_cols=33 Identities=9% Similarity=0.487 Sum_probs=24.7 Q ss_pred HHHHHHHHCCCCHHHHHH--HHHHHHHHHCCCCHHH Q ss_conf 899999731451156789--9999998504878678 Q gi|254780483|r 395 KIDELREKFKQSPPQVLQ--KAMIQLYKTHNINPLA 428 (581) Q Consensus 395 ~i~~i~ekyk~d~~~~~~--~e~m~ly~~~~vnP~~ 428 (581) =++++|+++.||| .+-+ .++|..|+.+.++..+ T Consensus 13 yl~kVK~rF~d~p-~~Y~~FL~il~~f~~~~i~~~~ 47 (85) T 1e91_A 13 YVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKG 47 (85) T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHHHHHHHTTCSSSC T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999999983593-9999999999999971345444 No 19 >2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1 Probab=36.75 E-value=13 Score=13.92 Aligned_cols=33 Identities=9% Similarity=0.487 Sum_probs=24.4 Q ss_pred HHHHHHHHCCCCHHHHHH--HHHHHHHHHCCCCHHH Q ss_conf 899999731451156789--9999998504878678 Q gi|254780483|r 395 KIDELREKFKQSPPQVLQ--KAMIQLYKTHNINPLA 428 (581) Q Consensus 395 ~i~~i~ekyk~d~~~~~~--~e~m~ly~~~~vnP~~ 428 (581) =++++|+++.||| .+-. -++|..|+.+.+++-+ T Consensus 13 yl~kVK~rF~d~p-~~Y~~FL~il~~f~~~~i~~~~ 47 (105) T 2f05_A 13 YVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKG 47 (105) T ss_dssp HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSSS T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCC T ss_conf 9999999982585-9999999999999971456544 No 20 >2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A Probab=29.60 E-value=18 Score=12.99 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=25.0 Q ss_pred HHHHHHHHCCCCHHH-HHHHHHHHHHHHCCCCHHH Q ss_conf 899999731451156-7899999998504878678 Q gi|254780483|r 395 KIDELREKFKQSPPQ-VLQKAMIQLYKTHNINPLA 428 (581) Q Consensus 395 ~i~~i~ekyk~d~~~-~~~~e~m~ly~~~~vnP~~ 428 (581) =++++|+++.|+|.. ..=.++|..|+++.+++.. T Consensus 16 fl~kVK~~f~d~p~~Y~~FL~il~~~~~~~~~~~~ 50 (80) T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPG 50 (80) T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 99999999823859999999999999867998999 No 21 >1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B Probab=28.61 E-value=19 Score=12.87 Aligned_cols=31 Identities=13% Similarity=0.534 Sum_probs=22.3 Q ss_pred HHHHHHHHCCCCHHHHHH--HHHHHHHHHCCCCH Q ss_conf 899999731451156789--99999985048786 Q gi|254780483|r 395 KIDELREKFKQSPPQVLQ--KAMIQLYKTHNINP 426 (581) Q Consensus 395 ~i~~i~ekyk~d~~~~~~--~e~m~ly~~~~vnP 426 (581) =++++|++|.|+| .+-+ .++|.-|+.+.++. T Consensus 16 yl~kVK~rF~d~p-~~Y~~FL~il~~f~~~~i~~ 48 (89) T 1g1e_B 16 YVNKIKNRFQGQP-DIYKAFLEILHTYQKEQRNA 48 (89) T ss_dssp HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCC T ss_conf 9999999982492-99999999999998656674 No 22 >1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic} Probab=27.64 E-value=19 Score=12.76 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 32016399999999 Q gi|254780483|r 356 LVGNFGIAIMLTTV 369 (581) Q Consensus 356 ~i~NyGiaIIllTi 369 (581) -+|-||++|..+-+ T Consensus 4 r~gtw~~~ilcmll 17 (30) T 1z65_A 4 RLGTWWVAILCMLL 17 (30) T ss_dssp SCSSHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 11008999999999 No 23 >3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides fragilis, structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343} Probab=27.08 E-value=20 Score=12.69 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=46.8 Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHC Q ss_conf 16399999999--9999888999999-------------9999988877888999997-314511567899999998504 Q gi|254780483|r 359 NFGIAIMLTTV--FVKLLFFPLAKKQ-------------YVSTANMKNIQPKIDELRE-KFKQSPPQVLQKAMIQLYKTH 422 (581) Q Consensus 359 NyGiaIIllTi--likli~~PLt~ks-------------~~Sm~kM~~lqP~i~~i~e-kyk~d~~~~~~~e~m~ly~~~ 422 (581) ||-++.-+... -|=-++.|++.+. -.||+||-..--.+-++.. ++.-| +++++..+|+|+++- T Consensus 133 ~~~ls~~~~e~kq~ifdiLsP~a~qAE~~lL~d~PLKeqIia~r~m~~~~q~i~~lyark~~~D-~~rl~~k~~el~~ql 211 (270) T 3iee_A 133 NYQLSTQMSEYKQNIFDILSPFTEQAELVLLVDNPLKAQIMSVRKMSSTMQSILNLYARKHRMD-GPRIDLKVAELTKQL 211 (270) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHTCTTSCC-HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHH T ss_conf 9999999999998899981388887899997279638999999999999999999862213872-689999999999999 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 878678899999999999999999987698 Q gi|254780483|r 423 NINPLAGCWPILLQIPVFFAIYKVISISLE 452 (581) Q Consensus 423 ~vnP~~GClP~l~q~p~~~a~~~~~~~~ie 452 (581) ..+ +-||..---+-=.--|..|..++| T Consensus 212 ~aA---~Klp~~~g~eeE~k~y~~FL~~v~ 238 (270) T 3iee_A 212 DAA---KKLPVVNGHEGEMKSYQAFLSQVE 238 (270) T ss_dssp HHH---HTSCCCTTCHHHHHHHHHHHHHHH T ss_pred HHH---CCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 872---389987674989999999999999 No 24 >2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens} Probab=26.42 E-value=20 Score=12.61 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHHHH----HHHCCCCHHH---HHH-HHHHHHHHHCC Q ss_conf 999888778889999----9731451156---789-99999985048 Q gi|254780483|r 385 STANMKNIQPKIDEL----REKFKQSPPQ---VLQ-KAMIQLYKTHN 423 (581) Q Consensus 385 Sm~kM~~lqP~i~~i----~ekyk~d~~~---~~~-~e~m~ly~~~~ 423 (581) ||.+++.|+-+|++= +++++-+|.+ +.+ +|+-++||++. T Consensus 2 ~Me~~~~lr~elK~WE~~F~~~~gRkP~k~DIk~~p~eI~~~YK~Y~ 48 (56) T 2kmu_A 2 SMERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYR 48 (56) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHH T ss_conf 07889999999999999999982899989988828999999999999 No 25 >3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Probab=25.74 E-value=21 Score=12.52 Aligned_cols=122 Identities=11% Similarity=0.160 Sum_probs=54.6 Q ss_pred CCCEEEEECCE--EEEEEE-CCCCEEEEEEECCCCCCCC--------CCCC---CEEEECCCCCCCCCEEEEECCCCCCC Q ss_conf 58728997664--999997-6995599999535713447--------8877---26885456665531000001347877 Q gi|254780483|r 67 MSPRVELKNPS--LIGSIN-LKGAQFDDLNLRGYHLDVS--------SNSP---IVTLLSPSNTKNAYFAELDYVSTANN 132 (581) Q Consensus 67 ~~~~I~Iend~--l~i~is-~~GG~I~~~~LK~Y~~~~~--------~ds~---~v~Ll~~~~~~~~y~~~~G~~~~~~~ 132 (581) ...++.++|+. ++++|. ..||.|.+++...- +-+. ...+ .+-++.|--++ +..-.+...+.. T Consensus 10 ~~~t~~l~~~~~~~~~~v~P~~G~~i~s~~~~g~-e~L~~~~~~~~~~~~~~~gG~p~lfP~~nR---i~~~~~~~~g~~ 85 (289) T 3k25_A 10 RPLTYHLEDDQSLARLSLVPGRGGLVTEWTVQGQ-PILYFDRERFQDPSLSVRGGIPILFPICGN---LPQDQFNHAGKS 85 (289) T ss_dssp BCCEEEEEETTTTEEEEEEGGGTSEEEEEEETTE-ECBCBCTTGGGSTTSCCCBSBCEEBSCSSC---CGGGEEEETTEE T ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCE-EEECCCCHHHHCCCCCCCCCCEEEEEEECC---CCCCEEEECCEE T ss_conf 9889999918984899988017989999997999-997689179737888637898699987088---689988689989 Q ss_pred CCCCCCCC----CEECCCCCCCCCCCCCEEEEEC--------CCCEEEEEEEEECCCCEEEEEEEECCCCCCCC Q ss_conf 54333432----1001566656666650477415--------88426999997168835899986315766642 Q gi|254780483|r 133 IELPNSNT----VWNLISGKILTPTTPIKLVFKN--------ANNILFERTISLDEHYLFKIVDTVTNNSIDQI 194 (581) Q Consensus 133 ~~~p~~~~----~~~~~~~~~l~~~~~v~l~~~~--------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i 194 (581) ..+|.+.. .|..... .......+.+.... .....++.+|++.++- +.++.+++|.++.+. T Consensus 86 ~~L~~hg~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~P~~~~~~~~~~L~~~~-l~~~~~v~N~~~~~~ 157 (289) T 3k25_A 86 YRLKQHGFARDLPWEVIGQ-QTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGHS-LRIEQRIANLGDQRM 157 (289) T ss_dssp EECCTTBSGGGSCCEEEEE-ECSSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEETTE-EEEEEEEEECSSSCE T ss_pred EECCCCCCCCCCEEEEEEE-CCCCCCEEEEEEECCCCHHCCCCCCCEEEEEEEEECCC-EEEEEEEECCCCCCE T ss_conf 7646667866761586300-03566305899866721111289862799999992463-036787881799874 No 26 >1ybx_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum} Probab=25.30 E-value=21 Score=12.46 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=9.8 Q ss_pred CEEEEECCCCEEEEEEEEECCCCE Q ss_conf 047741588426999997168835 Q gi|254780483|r 156 IKLVFKNANNILFERTISLDEHYL 179 (581) Q Consensus 156 v~l~~~~~~g~~i~kt~t~~~~Y~ 179 (581) .+++.+.++|.+ +.+++.++. T Consensus 67 ~~veg~sg~GlV---kVtvnG~~~ 87 (143) T 1ybx_A 67 KTVEASAGGGAV---TVVATGRKD 87 (143) T ss_dssp CEEEEEETTTTE---EEEEETTCC T ss_pred CEEEEEECCCEE---EEEEECCEE T ss_conf 699999889879---999978916 No 27 >2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1 Probab=23.72 E-value=23 Score=12.26 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=26.9 Q ss_pred HHHHHHHHHH-CCCCHHHHHHH----------HHHHHHHHHHHHHHHHH Q ss_conf 9999999850-48786788999----------99999999999999987 Q gi|254780483|r 412 QKAMIQLYKT-HNINPLAGCWP----------ILLQIPVFFAIYKVISI 449 (581) Q Consensus 412 ~~e~m~ly~~-~~vnP~~GClP----------~l~q~p~~~a~~~~~~~ 449 (581) ..++-+|||+ +|+.|=.|-|| --|+--+|+.+|..+.. T Consensus 37 ~~rl~rLykEl~G~spPkG~lP~S~dWf~tw~~niHsSlf~~iY~~l~~ 85 (192) T 2avu_E 37 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 85 (192) T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH T ss_conf 9999999998608999998688876435555423689999999999974 No 28 >3h9p_A Putative triphosphoribosyl-dephospho-COA synthase; structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.30A {Archaeoglobus fulgidus dsm 4304} Probab=23.04 E-value=23 Score=12.17 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=21.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985048786788999999999999999 Q gi|254780483|r 413 KAMIQLYKTHNINPLAGCWPILLQIPVFFAIY 444 (581) Q Consensus 413 ~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~ 444 (581) .+.=+.+++.++|| |||--+| =.-||+++. T Consensus 216 ~~ld~~~~~~~lsP-GgsADLl-A~tlfl~~l 245 (249) T 3h9p_A 216 KELDEKLLKDGANP-GTIADLT-ASSIFLALA 245 (249) T ss_dssp HHHHHHHHHHTCCC-HHHHHHH-HHHHHHHHH T ss_pred HHHHHHHHHCCCCC-CHHHHHH-HHHHHHHHH T ss_conf 99999999889796-3799999-999999996 No 29 >1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} Probab=22.22 E-value=24 Score=12.06 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=7.3 Q ss_pred EEEEEEECCCCCCCCCCC Q ss_conf 899986315766642224 Q gi|254780483|r 180 FKIVDTVTNNSIDQIRFS 197 (581) Q Consensus 180 i~i~~~v~N~s~~~i~~~ 197 (581) +.++.+|+|++++++.+. T Consensus 266 l~~~~~VTN~g~~~v~lg 283 (382) T 1yew_A 266 MRMKLTITNHGNSPIRLG 283 (382) T ss_dssp EEEEEEEEECSSSCEEEE T ss_pred EEEEEEEECCCCCCEEEE T ss_conf 999999974898756872 Done!