Query         gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 581
No_of_seqs    197 out of 1773
Neff          8.0 
Searched_HMMs 23785
Date          Mon May 30 12:07:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780483.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3blc_A Inner membrane protein  100.0   2E-41 1.4E-45  319.3  21.3  277   65-350    31-320 (330)
  2 3bs6_A Inner membrane protein  100.0 2.1E-34   9E-39  267.9  22.9  261   67-336     2-275 (280)
  3 3dcd_A Galactose mutarotase re  97.3  0.0055 2.3E-07   38.6  11.8  117   70-196     2-138 (307)
  4 3nre_A Aldose 1-epimerase; str  96.8   0.029 1.2E-06   33.4  11.8  121   70-196     4-144 (291)
  5 2hta_A Putative enzyme related  95.6    0.11 4.8E-06   29.0   9.6  113   69-196    42-174 (309)
  6 1snz_A Aldose 1-epimerase; mut  94.9    0.19   8E-06   27.4  10.6   29   68-96     21-49  (344)
  7 1lur_A Aldose 1-epimerase; vit  94.1    0.28 1.2E-05   26.2  10.1   29   68-96     12-41  (339)
  8 3imh_A Galactose-1-epimerase;   93.5    0.35 1.5E-05   25.4  11.3   28   69-96     19-47  (338)
  9 3mwx_A Aldose 1-epimerase; str  91.7    0.59 2.5E-05   23.8  11.1   28   69-96     15-43  (326)
 10 3os7_A Galactose mutarotase-li  91.3    0.64 2.7E-05   23.5  10.6  124   68-196    18-180 (341)
 11 1nsx_A Galactose mutarotase; e  90.7    0.73 3.1E-05   23.2  11.2  126   68-199    12-170 (347)
 12 1jov_A HI1317; hypothetical pr  85.4     1.5 6.3E-05   20.8   7.6   30   67-96     20-49  (270)
 13 2cir_A Hexose-6-phosphate muta  73.9     3.4 0.00014   18.2  10.2  113   71-194    13-152 (297)
 14 1o7d_D Lysosomal alpha-mannosi  67.4     4.6 0.00019   17.3   3.6   27   70-96      2-28  (282)
 15 1yga_A Hypothetical 37.9 kDa p  62.9     5.6 0.00024   16.7   9.8   30   67-96      9-39  (342)
 16 1v54_D Cytochrome C oxidase su  58.9     3.3 0.00014   18.4   1.6   31  390-420    31-61  (147)
 17 1z45_A GAL10 bifunctional prot  54.8     7.6 0.00032   15.7   4.4   28   69-96    374-402 (699)
 18 1e91_A Paired amphipathic heli  41.7      11 0.00045   14.6   1.9   33  395-428    13-47  (85)
 19 2f05_A Paired amphipathic heli  36.8      13 0.00056   13.9   1.8   33  395-428    13-47  (105)
 20 2cr7_A Paired amphipathic heli  29.6      18 0.00075   13.0   4.5   34  395-428    16-50  (80)
 21 1g1e_B SIN3A; four-helix bundl  28.6      19 0.00078   12.9   1.7   31  395-426    16-48  (89)
 22 1z65_A PRPLP, prion-like prote  27.6      19 0.00081   12.8   1.5   14  356-369     4-17  (30)
 23 3iee_A Putative exported prote  27.1      20 0.00083   12.7   5.3   90  359-452   133-238 (270)
 24 2kmu_A ATP-dependent DNA helic  26.4      20 0.00085   12.6   2.5   39  385-423     2-48  (56)
 25 3k25_A SLR1438 protein; struct  25.7      21 0.00087   12.5  12.2  122   67-194    10-157 (289)
 26 1ybx_A Conserved hypothetical   25.3      21 0.00089   12.5   2.1   21  156-179    67-87  (143)
 27 2avu_E Flagellar transcription  23.7      23 0.00095   12.3   1.9   38  412-449    37-85  (192)
 28 3h9p_A Putative triphosphoribo  23.0      23 0.00098   12.2   5.0   30  413-444   216-245 (249)
 29 1yew_A Particulate methane mon  22.2      24   0.001   12.1   4.1   18  180-197   266-283 (382)

No 1  
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic domain, transmembrane, chaperone; 2.50A {Escherichia coli K12}
Probab=100.00  E-value=2e-41  Score=319.26  Aligned_cols=277  Identities=16%  Similarity=0.306  Sum_probs=213.8

Q ss_pred             CCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCEE
Q ss_conf             1458728997664999997699559999953571344788772688545666553100000134787-754333432100
Q gi|254780483|r   65 LSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NIELPNSNTVWN  143 (581)
Q Consensus        65 ~~~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~~~p~~~~~~~  143 (581)
                      ..+++.|+||||+++++||++||+|++++||+|+...+++. ++.|++. +..+.|++.+|++.... +...+..++.|+
T Consensus        31 ~~~~~~itiend~~~~~~ss~GG~I~~~~Lk~y~~~~~~~~-~l~l~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  108 (330)
T 3blc_A           31 SGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLET-SPQFIYQAQSGLTGRDGPDNPANGPRPLYN  108 (330)
T ss_dssp             --CCCEEEEECSSCEEEEETBTCCEEEEEEEEEESSTTCSS-EEEEEEE-CSSCEEEEEEEEESTTCTTSGGGCSCCBCB
T ss_pred             CCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCC-CEEECCC-CCCCCEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf             67767799988849999989998897998778854447998-5375467-765430111253003686656777652044


Q ss_pred             CCCCCC----CCCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCC-----CCCC
Q ss_conf             156665----66666504774158842699999716-8835899986315766642224210120256865-----4442
Q gi|254780483|r  144 LISGKI----LTPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQT-----ATNT  213 (581)
Q Consensus       144 ~~~~~~----l~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~-----~~~~  213 (581)
                      ......    ..+...+++++.+++|+.++|+|+++ ++|+++++.+++|.+..++.+.++..+.+.....     ....
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~k~y~~~~~~y~i~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (330)
T 3blc_A          109 VEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSN  188 (330)
T ss_dssp             CSCSEEECCTTCCEEEEEEEEECTTSCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEEEEEEEEESSCCCCC------
T ss_pred             ECCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf             13653672257877369999746996599999973698637999999851667764334101001346676556555553


Q ss_pred             C--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEEC
Q ss_conf             0--01100000156543210013333333222332346357873110589996078984158998316766410222202
Q gi|254780483|r  214 F--GVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSA  291 (581)
Q Consensus       214 ~--~~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~  291 (581)
                      +  ..+.+......++..++..+++.++++.....++.+|+|++||||+++++|+++.........  ..+..+.+++..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wva~~~kYF~s~lip~~~~~~~~~~~~--~~~~~~~~~~~~  266 (330)
T 3blc_A          189 FALHTFRGAAYSTPDAAYAAYAFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTAN--LGNGIAAIGYKS  266 (330)
T ss_dssp             ----CCEEEEEECSSCSSCEECHHHHHTTCCCEEEESSCEEEEEESSEEEEEEEESSSCEEEEEEE--EETTEEEEEEEC
T ss_pred             CEEEECCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEECCCCCCEEEEEE--CCCCEEEEEEEC
T ss_conf             102321341277157651342244322123211025674587715657999931688741245540--689616999855


Q ss_pred             CCCCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             44445788603678998850002788763220146310123332011035689999999
Q gi|254780483|r  292 NEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLM  350 (581)
Q Consensus       292 ~~~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i~kplf~~L  350 (581)
                      +..+++||++.+.++++|+|||+|++|++++.+     ||++||||||+||+||||..+
T Consensus       267 ~~~~l~pg~~~~~~~~~Y~GPk~y~~L~~~~~~-----le~~id~GWf~fIakPlf~~~  320 (330)
T 3blc_A          267 QPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPH-----LDLTVDYGWLWFISQPLLVPR  320 (330)
T ss_dssp             CCEEECTTCEEEEEEEEEEEECCHHHHHHHSTT-----CCCHHHHHHHHHHTSCCCCCC
T ss_pred             CCEEECCCCEEEEEEEEEECCCCHHHHHHHHCC-----HHHEEECCCHHHHHHHHEEEC
T ss_conf             746878997478998999850819999866509-----211683421988543155066


No 2  
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=100.00  E-value=2.1e-34  Score=267.95  Aligned_cols=261  Identities=16%  Similarity=0.274  Sum_probs=203.1

Q ss_pred             CCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCEECC
Q ss_conf             58728997664999997699559999953571344788772688545666553100000134787-75433343210015
Q gi|254780483|r   67 MSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NIELPNSNTVWNLI  145 (581)
Q Consensus        67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~~~p~~~~~~~~~  145 (581)
                      +++.|+||||+++++||++||+|++++||+|+...+.++ ++.|++++ ....|++++++....+ +...+.....|+..
T Consensus         2 ~~~~itvend~~~~~~s~~GG~I~~~~LK~y~~~~~~~~-pv~Ll~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~   79 (280)
T 3bs6_A            2 QGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETS-PQFIYQAQSGLTGRDGPDNPANGPRPLYNVE   79 (280)
T ss_dssp             --CEEEEECSSCEEEEETBTTEEEEEEEEEEESSTTCCS-EEEEEEEE-TTEEEEEEEEEESTTCTTSGGGSSCCBCBCS
T ss_pred             CCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCC-CEEEECCC-CCCCEEEEEEEECCCCCCCCCCCCCCCEEEC
T ss_conf             977999989959999989998980888678855437999-75981689-8862378861021443224477765203403


Q ss_pred             CCCC----CCCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCC-----CCCCC
Q ss_conf             6665----66666504774158842699999716-88358999863157666422242101202568654-----44200
Q gi|254780483|r  146 SGKI----LTPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTA-----TNTFG  215 (581)
Q Consensus       146 ~~~~----l~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~~-----~~~~~  215 (581)
                      ....    ..+...++|++.+++|+.++|+|+|. ++|+++++++++|.+..++.+..+..+.+...+..     ...+.
T Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~k~y~~~~~~Y~v~~~~~v~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (280)
T 3bs6_A           80 KDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFA  159 (280)
T ss_dssp             CSEEECCTTCSEEEEEEEEECTTCCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEEEEEEEEESSCC-----------
T ss_pred             CCEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             65367426888727999984699849999999649966999999986267775301046898705677644445555311


Q ss_pred             --CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCC
Q ss_conf             --110000015654321001333333322233234635787311058999607898415899831676641022220244
Q gi|254780483|r  216 --VQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANE  293 (581)
Q Consensus       216 --~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~~~  293 (581)
                        .+.+.+.+..++.+++.++++..+.......+..+|+|++||||++|+||+++..........  .++.+.+++..+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wva~~~kYF~sa~ip~~~~~~~~~~~~~--~~~~~~~~~~~~~  237 (280)
T 3bs6_A          160 LHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANL--GNGIAAIGYKSQP  237 (280)
T ss_dssp             --CCCEEEEECTTTCCEEECHHHHHTTCCCEEEEESCEEEEEETTEEEEEEEESSSEEEEEEEEE--ETTEEEEEEECCC
T ss_pred             EEEECCCEEECCCCCCEECCCCCCCCCCCEEEECCCCEEEEECCEEEEEEECCCCCCEEEEEEEC--CCCEEEEEEECCC
T ss_conf             00010440333676513513234443442354036527987077799999727987503677526--9970799997574


Q ss_pred             CCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             4457886036789988500027887632201463101233320
Q gi|254780483|r  294 ITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDW  336 (581)
Q Consensus       294 ~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~  336 (581)
                      .+++||++.++++++|+|||+|++|++++.+     ||++||-
T Consensus       238 ~~l~~~~~~~~~~~lY~GPk~~~~L~~~~~~-----Le~~vD~  275 (280)
T 3bs6_A          238 VLVQPGQTGAMNSTLWVGPEIQDKMAAVAPH-----LDLTVDH  275 (280)
T ss_dssp             EEECTTCEEEEEEEEEEESCCHHHHHHHSTT-----GGGGTC-
T ss_pred             EEECCCCEEEEEEEEEECCCCHHHHHHHHCC-----CCCCCCC
T ss_conf             6878997689998999841819999877568-----7710987


No 3  
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=97.31  E-value=0.0055  Score=38.62  Aligned_cols=117  Identities=17%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             EEEEECCEEEEEEECCCCEEEEEEECCCCC-CCC-CC------CCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCC---
Q ss_conf             289976649999976995599999535713-447-88------7726885456665531000001347877543334---
Q gi|254780483|r   70 RVELKNPSLIGSINLKGAQFDDLNLRGYHL-DVS-SN------SPIVTLLSPSNTKNAYFAELDYVSTANNIELPNS---  138 (581)
Q Consensus        70 ~I~Iend~l~i~is~~GG~I~~~~LK~Y~~-~~~-~d------s~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~---  138 (581)
                      .++|||+.++++|+..||.|.++..|+-.. -+- .+      ..++ | .|-..+   +..-.+...+....+|.+   
T Consensus         2 ~ytl~n~~l~v~v~~~Ga~i~s~~~~~~~~e~l~~~~~~~~~~~~p~-l-fP~~gR---i~~g~~~~~g~~~~l~~HG~~   76 (307)
T 3dcd_A            2 DYTIENNMIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIWGRHAPV-L-FPIVGR---LKNDEYTYKGKTYHLGQHGFA   76 (307)
T ss_dssp             EEEEECSSEEEEEETBTTEEEEEEETTTCCBCBCCCCTTTCCCSSCE-E-BSCSSC---CGGGEEEETTEEEECCTTBSG
T ss_pred             EEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCCHHHHCCCCCE-E-EEEECC---CCCCEEEEEEEEEEECCCCCC
T ss_conf             89998799999997339399999989999389971887881789978-9-999797---289969886149843668982


Q ss_pred             -CCCEECCCCCCCCCCCCCEEEEEC--------CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf             -321001566656666650477415--------8842699999716883589998631576664222
Q gi|254780483|r  139 -NTVWNLISGKILTPTTPIKLVFKN--------ANNILFERTISLDEHYLFKIVDTVTNNSIDQIRF  196 (581)
Q Consensus       139 -~~~~~~~~~~~l~~~~~v~l~~~~--------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~  196 (581)
                       +..|.+...    .+..+++....        .....++.+|+++++ .+.++++++|.++.+..+
T Consensus        77 ~~~~W~v~~~----~~~~~~~~l~~~~~~~~~~P~~~~~~~~~tL~~~-~L~i~~~v~N~~~~~~p~  138 (307)
T 3dcd_A           77 RNADFEVENH----TKESITFLLKDNEETRKVYPFKFEFRVNYNLMNN-LLEENFSVVNKSDETMIF  138 (307)
T ss_dssp             GGSBCEEEEE----ETTEEEEEEECCHHHHHHSCCCEEEEEEEEEETT-EEEEEEEEEECSSSCEEE
T ss_pred             CCCEEEEEEC----CCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCC-EEEEEEEEECCCCCCEEE
T ss_conf             8840699981----6981499994036623379941899999996798-379999998588852788


No 4  
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Probab=96.82  E-value=0.029  Score=33.40  Aligned_cols=121  Identities=13%  Similarity=0.142  Sum_probs=63.1

Q ss_pred             EEEEECCEEEEEEECCCCEEEEEEECCCCCCC---CCC----CCCEEEECCCCCC---CCCEEE---EECCCCCCCCCCC
Q ss_conf             28997664999997699559999953571344---788----7726885456665---531000---0013478775433
Q gi|254780483|r   70 RVELKNPSLIGSINLKGAQFDDLNLRGYHLDV---SSN----SPIVTLLSPSNTK---NAYFAE---LDYVSTANNIELP  136 (581)
Q Consensus        70 ~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~---~~d----s~~v~Ll~~~~~~---~~y~~~---~G~~~~~~~~~~p  136 (581)
                      .++|+|+.++++|+..||.|.+++.++-. -+   +.+    ....-.+.|-..+   ..|...   ..+.........+
T Consensus         4 ~~~l~n~~~~~~v~~~Ga~l~s~~~~g~~-~l~~~~~~~~~~~~~~~~l~P~~gRi~~g~~~~~g~~y~l~~n~~~~~~~   82 (291)
T 3nre_A            4 IYTLSHGSLKLDVSDQGGVIEGFWRDTTP-LLRPGKKSGVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHY   82 (291)
T ss_dssp             EEEEEETTEEEEEETBTTEEEEEEETTEE-SSCCCCCSSCGGGSSEEEEBSCCSBCGGGEEEETTEEEECCCCSTTCSSC
T ss_pred             EEEEECCCEEEEECCCCCEEEEEEECCEE-EEECCCCCCCCCCCCCCEEEEECCCCCCCEEEECCEEEECCCCCCCCCCC
T ss_conf             99996699999984279199999999999-99757334555556886798898891799898999999857889998747


Q ss_pred             C----CCCCEECCCCCCCCCCCCCEEEEEC---CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf             3----4321001566656666650477415---8842699999716883589998631576664222
Q gi|254780483|r  137 N----SNTVWNLISGKILTPTTPIKLVFKN---ANNILFERTISLDEHYLFKIVDTVTNNSIDQIRF  196 (581)
Q Consensus       137 ~----~~~~~~~~~~~~l~~~~~v~l~~~~---~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~  196 (581)
                      .    .+..|++...    ++..++|+...   ..+..++.+|++.++ .+.++++++|.++.+..+
T Consensus        83 ~HG~~~~~~w~v~~~----~~~~v~l~~~~~~~p~~f~l~~~~~L~~~-~L~~~~~v~N~~~~~~p~  144 (291)
T 3nre_A           83 LHGDGWLGEWQCVSH----SDDSLCLVYEHRSGVYHYRVSQAFHLTAD-TLTVTLSVTNQGAETLPF  144 (291)
T ss_dssp             BSBSGGGSBCEEEEE----CSSEEEEEEEEESSSCEEEEEEEEEECSS-EEEEEEEEEECSSSCEEE
T ss_pred             CCCCCCCCEEEEEEC----CCCEEEEEEECCCCCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCCE
T ss_conf             788833755799983----69968999830469987779999999777-179999998148855261


No 5  
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A
Probab=95.63  E-value=0.11  Score=29.01  Aligned_cols=113  Identities=14%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCC--------CCCCEEEEECCCCCCCCCCCCC--
Q ss_conf             728997664999997699559999953571344788772688545666--------5531000001347877543334--
Q gi|254780483|r   69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNT--------KNAYFAELDYVSTANNIELPNS--  138 (581)
Q Consensus        69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~--------~~~y~~~~G~~~~~~~~~~p~~--  138 (581)
                      +.|+|+|+..+++|+..||.|.+++.+.=+       + + |...+..        +..-..-+-|.+......+|.+  
T Consensus        42 ~~i~i~~~~~~a~I~l~GA~l~sw~~~~~~-------e-~-Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~~~~~lp~HGF  112 (309)
T 2hta_A           42 DLIVVDHPQVKASFALQGAHLLSWKPVGEE-------E-V-LWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGF  112 (309)
T ss_dssp             EEEEEEETTEEEEEETBTTEEEEEEETTSC-------C-C-BCBCTTCCCCTTCCCSBSBCEEBSCCSSCSSTTCCTTBS
T ss_pred             CEEEEECCCEEEEEECCCCEEEEEEECCCC-------E-E-EECCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             589997899899998889899899949998-------7-8-977825514699842589837848158898788998866


Q ss_pred             --CCCEECCCCCCCCCCCCCEEEEECCC--------CEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf             --32100156665666665047741588--------42699999716883589998631576664222
Q gi|254780483|r  139 --NTVWNLISGKILTPTTPIKLVFKNAN--------NILFERTISLDEHYLFKIVDTVTNNSIDQIRF  196 (581)
Q Consensus       139 --~~~~~~~~~~~l~~~~~v~l~~~~~~--------g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~  196 (581)
                        +..|++.......+...++|.....+        ...++.+|++..+      .+++|.+..+..+
T Consensus       113 AR~~~W~l~~~~ed~~~~~l~l~L~~~~~t~~~~Pf~F~l~~~~tL~~~------l~v~N~~~~pmpf  174 (309)
T 2hta_A          113 ARNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGKT------CEIELEAHGEFAT  174 (309)
T ss_dssp             GGGSBCEEEEEEECSSCEEEEEEEECCHHHHHHSCCCCEEEEEEEESSS------EEEEEEEESSEEE
T ss_pred             EECCCEEEEEECCCCCCEEEEEEECCCCCHHHHCCCCEEEEEEEECCCC------EEEEECCCCCCCC
T ss_conf             2156548997427889379999968982034317761899999942751------8999704885102


No 6  
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Probab=94.87  E-value=0.19  Score=27.40  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=26.2

Q ss_pred             CCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             87289976649999976995599999535
Q gi|254780483|r   68 SPRVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        68 ~~~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      .++++++|+.++++|.+.||.|.++.+++
T Consensus        21 v~~~tl~n~~~~v~i~~~GA~i~~~~~~~   49 (344)
T 1snz_A           21 VEKFQLQSDLLRVDIISWGCTITALEVKD   49 (344)
T ss_dssp             EEEEEEECSSCEEEEETBTTEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEECCCCEEEEEEEEC
T ss_conf             99999988999999988690999999778


No 7  
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4
Probab=94.09  E-value=0.28  Score=26.18  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=26.2

Q ss_pred             CCEEEEECCE-EEEEEECCCCEEEEEEECC
Q ss_conf             8728997664-9999976995599999535
Q gi|254780483|r   68 SPRVELKNPS-LIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        68 ~~~I~Iend~-l~i~is~~GG~I~~~~LK~   96 (581)
                      +..|+++|+. ++++|.+.||.|.++.+++
T Consensus        12 ~~~i~l~N~~g~~v~i~~~GA~i~~~~~pd   41 (339)
T 1lur_A           12 SGFIEIANKQGLTATLLPFGATLAKLTFPD   41 (339)
T ss_dssp             CCCEEEECSSSCEEEEETBTTEEEEEEEEC
T ss_pred             CCEEEEECCCCCEEEEECCCCEEEEEEEEC
T ss_conf             756999969995999989692999999888


No 8  
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm}
Probab=93.48  E-value=0.35  Score=25.44  Aligned_cols=28  Identities=21%  Similarity=0.320  Sum_probs=25.4

Q ss_pred             CEEEEECCE-EEEEEECCCCEEEEEEECC
Q ss_conf             728997664-9999976995599999535
Q gi|254780483|r   69 PRVELKNPS-LIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~   96 (581)
                      ..|+++|+. ++++|.+.||.|.++.+++
T Consensus        19 ~~~tl~N~~G~~v~i~~~GA~i~~~~~~~   47 (338)
T 3imh_A           19 CEITLENDAGMAVKVLNYGATLEKVLLDG   47 (338)
T ss_dssp             EEEEEECSSSEEEEEETBTTEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEECCCCEEEEEEECC
T ss_conf             99999979983999987591999999899


No 9  
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Probab=91.67  E-value=0.59  Score=23.80  Aligned_cols=28  Identities=18%  Similarity=0.095  Sum_probs=24.5

Q ss_pred             CEEEEECCEEEEEEEC-CCCEEEEEEECC
Q ss_conf             7289976649999976-995599999535
Q gi|254780483|r   69 PRVELKNPSLIGSINL-KGAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~l~i~is~-~GG~I~~~~LK~   96 (581)
                      +.|++||+.+++++.. .||+|.++..|+
T Consensus        15 ~~i~l~N~~l~~~v~p~~Ga~i~sl~~~~   43 (326)
T 3mwx_A           15 PAIKAGNEHLEMIVVPEWGSNVISLVDKT   43 (326)
T ss_dssp             EEEEEEESSEEEEEETTTTTEEEEEEETT
T ss_pred             EEEEEECCCEEEEECHHCCCEEEEEEECC
T ss_conf             89999889899997054498999999999


No 10 
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum}
Probab=91.30  E-value=0.64  Score=23.54  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=60.6

Q ss_pred             CCEEEEECCEEEEEEEC-CCCEEEEEEECCCCCCC----CCC--------CC---CEEEECCCCCCCCCEEEEECCCCCC
Q ss_conf             87289976649999976-99559999953571344----788--------77---2688545666553100000134787
Q gi|254780483|r   68 SPRVELKNPSLIGSINL-KGAQFDDLNLRGYHLDV----SSN--------SP---IVTLLSPSNTKNAYFAELDYVSTAN  131 (581)
Q Consensus        68 ~~~I~Iend~l~i~is~-~GG~I~~~~LK~Y~~~~----~~d--------s~---~v~Ll~~~~~~~~y~~~~G~~~~~~  131 (581)
                      .+.|+++|+.++++|.. .||+|.+++.+.--..+    ...        .+   .+-++.+.+  +.--..+.+  .+.
T Consensus        18 ~~~i~l~~~~~~a~v~p~~Ga~i~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~p~l~p~~--Ri~~g~f~~--~G~   93 (341)
T 3os7_A           18 HKCIRFAAGGYEALIIPDVGGNVVELKDTNKGVTILRTPKKDLKFEDFKNRPQVYGLPVLFPPN--RIDDGTFKL--GDK   93 (341)
T ss_dssp             EEEEEEEETTEEEEEETTTTTEEEEEEETTTTEECBCCCCTTCCHHHHHHSGGGSSCCEESSCS--EEETTEEEE--TTE
T ss_pred             CEEEEEEECCEEEEEHHHCCCEEEEEEECCCCCEEEECCCCCCCCHHHCCCCCCCCEEEECCCC--CEECCEEEE--CCE
T ss_conf             3899998299999981538989999897899908996555434642221477544617925688--388999999--999


Q ss_pred             CCC---------CCC----CCCCEECCCCCCCCCCCCCEEEE--ECC--------CCEEEEEEEEECCCCEEEEEEEECC
Q ss_conf             754---------333----43210015666566666504774--158--------8426999997168835899986315
Q gi|254780483|r  132 NIE---------LPN----SNTVWNLISGKILTPTTPIKLVF--KNA--------NNILFERTISLDEHYLFKIVDTVTN  188 (581)
Q Consensus       132 ~~~---------~p~----~~~~~~~~~~~~l~~~~~v~l~~--~~~--------~g~~i~kt~t~~~~Y~i~i~~~v~N  188 (581)
                      ...         .+.    .+..|++.......++..+++++  ...        ....++.+|+++++- +.++++++|
T Consensus        94 ~y~l~~n~~~~~~~~HG~ar~~~w~v~~~~~~~~~~~v~l~~~~~~~~~~~~~~P~~~~l~~~~~l~~~~-L~~~~~v~N  172 (341)
T 3os7_A           94 TYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKG-LKQTTSVVN  172 (341)
T ss_dssp             EEECCCSBTTTTEEESCSGGGSCCEEEEEEEETTEEEEEEEEEECTTSTTTTTSCCCEEEEEEEEEETTE-EEEEEEEEE
T ss_pred             EEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCC-CEEEEEEEC
T ss_conf             9988787899975777884798169888641688856999998079855224798159999999995688-789999972


Q ss_pred             CCCCCCCC
Q ss_conf             76664222
Q gi|254780483|r  189 NSIDQIRF  196 (581)
Q Consensus       189 ~s~~~i~~  196 (581)
                      .++.+..+
T Consensus       173 ~~~~~~p~  180 (341)
T 3os7_A          173 LSSEEMPL  180 (341)
T ss_dssp             CSSSCEEE
T ss_pred             CCCCCEEE
T ss_conf             68964675


No 11 
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Probab=90.70  E-value=0.73  Score=23.16  Aligned_cols=126  Identities=20%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             CCEEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEE-EEE----------CCCCCCCCCC
Q ss_conf             8728997664-999997699559999953571344788772688545666553100-000----------1347877543
Q gi|254780483|r   68 SPRVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFA-ELD----------YVSTANNIEL  135 (581)
Q Consensus        68 ~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~-~~G----------~~~~~~~~~~  135 (581)
                      .+.|+++|+. ++++|.+.||.|.++..++-..-++-++.---+     ....|+- ..|          +...+....+
T Consensus        12 ~~~~tL~N~~g~~v~i~~~GA~i~~~~~~~~~vvLg~d~~~~y~-----~~~~~~Ga~iGr~anRI~~g~f~~~G~~y~L   86 (347)
T 1nsx_A           12 SDLISLTNKAGVTISFTNLGARIVDWQKDGKHLILGFDSAKEYL-----EKDAYPGATVGPTAGRIKDGLVKISGKDYIL   86 (347)
T ss_dssp             EEEEEEECTTSCEEEEETBTTEEEEEEETTEESBCCCSSHHHHH-----HTCSCTTCEECSBCSEEGGGEEEETTEEEEC
T ss_pred             CEEEEEECCCCCEEEEECCCEEEEECCCCCCEEEECCCCHHHHH-----HCCCCCCCEECCCCCEECCCCEEECCEEEEE
T ss_conf             26999996998499997889699982469976896699989981-----0788516371550670528805389989991


Q ss_pred             C---------C-----CCCCEECCCCCCCCCCCCCEEEEECC-------CCEEEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf             3---------3-----43210015666566666504774158-------8426999997168835899986315766642
Q gi|254780483|r  136 P---------N-----SNTVWNLISGKILTPTTPIKLVFKNA-------NNILFERTISLDEHYLFKIVDTVTNNSIDQI  194 (581)
Q Consensus       136 p---------~-----~~~~~~~~~~~~l~~~~~v~l~~~~~-------~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i  194 (581)
                      +         +     ....|.+.... ...+.+|+|++...       ..+.++-+|+++++-.+.++++.......++
T Consensus        87 ~~N~~~n~lHGG~~g~~~~~w~~~~~~-~~~~~~v~~~~~~~dg~~GyPg~~~~~vtY~L~~~~~l~i~~~a~~~~~tp~  165 (347)
T 1nsx_A           87 NQNEGPQTLHGGEESIHTKLWTYEVTD-LGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVF  165 (347)
T ss_dssp             CCCBTTBEETTSTTCGGGSBCEEEEEE-CSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEEESSCEEC
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCEEE
T ss_conf             478898765688544454320036662-7875179999975886679757899999999665888999999752776266


Q ss_pred             CCCCC
Q ss_conf             22421
Q gi|254780483|r  195 RFSPR  199 (581)
Q Consensus       195 ~~~~~  199 (581)
                      .+.+.
T Consensus       166 nltnH  170 (347)
T 1nsx_A          166 NPTGN  170 (347)
T ss_dssp             BCEEC
T ss_pred             ECCCC
T ss_conf             61563


No 12 
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7
Probab=85.44  E-value=1.5  Score=20.85  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=25.9

Q ss_pred             CCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             587289976649999976995599999535
Q gi|254780483|r   67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      .-+.+.|+|+...++|+..||.|.+++-++
T Consensus        20 ~~~~~~l~~~~~~a~i~~~Ga~l~s~~~~~   49 (270)
T 1jov_A           20 DIPVLHLKHAVGTAKISLQGAQLISWKPQN   49 (270)
T ss_dssp             TEEEEEEEETTEEEEEETBTTEEEEEEETT
T ss_pred             CCCEEEEECCCEEEEEECCCCEEEEEEECC
T ss_conf             902899947988999989998998999799


No 13 
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=73.93  E-value=3.4  Score=18.24  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=59.3

Q ss_pred             EEEECCEEEEEEECCCCEEEEEEECCCC-------CCCCCCCC---CEEEECCCCCCCCCEEEEECCCC-CCCCCCCCC-
Q ss_conf             8997664999997699559999953571-------34478877---26885456665531000001347-877543334-
Q gi|254780483|r   71 VELKNPSLIGSINLKGAQFDDLNLRGYH-------LDVSSNSP---IVTLLSPSNTKNAYFAELDYVST-ANNIELPNS-  138 (581)
Q Consensus        71 I~Iend~l~i~is~~GG~I~~~~LK~Y~-------~~~~~ds~---~v~Ll~~~~~~~~y~~~~G~~~~-~~~~~~p~~-  138 (581)
                      +.++|+..+++|+..||.+.+++...-.       ...+...+   .+-++.|-         +|-... +....+|.| 
T Consensus        13 ~~~~n~~~~a~v~~~Ga~l~s~~~~G~e~l~~~~~a~~~~~~~iRGGiPvlfP~---------~G~~~~~~~~~~lp~HG   83 (297)
T 2cir_A           13 THPADETTSVHILKYGATVYSWKLKSEEQLWLSTAAKLDGSKPVRGGIPLVFPV---------FGKNSTDEHLSKLPQHG   83 (297)
T ss_dssp             EETTEEEEEEEEETBTTEEEEEEETTEECBCBCTTCCCSSSSCCSBSBCEEBSC---------SSCCSSSTTGGGSCTTB
T ss_pred             ECCCCCCEEEEEECCCCEEEEEEECCEEEEECCCHHHCCCCCCCCCCCEEEEEE---------ECCCCCCCCCCCCCCCC
T ss_conf             927999789999768969999988998988338567427999756888598835---------08889898555899862


Q ss_pred             ---CCCEECCCCCCCCCCCCCEEEEEC-----------CCCEEEEEEEEECCCCEEEEEEEECCCCC-CCC
Q ss_conf             ---321001566656666650477415-----------88426999997168835899986315766-642
Q gi|254780483|r  139 ---NTVWNLISGKILTPTTPIKLVFKN-----------ANNILFERTISLDEHYLFKIVDTVTNNSI-DQI  194 (581)
Q Consensus       139 ---~~~~~~~~~~~l~~~~~v~l~~~~-----------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~-~~i  194 (581)
                         +..|++..... .+...+++....           .-...++.+|+++++ .+.++.+|+|.++ ++.
T Consensus        84 faR~~~W~v~~~~~-~~~~~v~~~L~~~~~~~~t~~~yPf~f~l~~~y~L~~~-~L~~~~~v~N~g~~~~~  152 (297)
T 2cir_A           84 LARNSTWEFLGQTK-ENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSD-YLKTAIEVENTSSSKEL  152 (297)
T ss_dssp             SGGGSBCEEEEEEE-ETTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECSS-EEEEEEEEECCCSSCCE
T ss_pred             CEECCCEEEEEEEC-CCCCCEEEEEEECCCCHHHHHHCCCCEEEEEEEEEECC-CEEEEEEEEECCCCCCE
T ss_conf             62665159988641-67761169997357998898208972799999999189-27999999949998424


No 14 
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=67.37  E-value=4.6  Score=17.33  Aligned_cols=27  Identities=11%  Similarity=0.092  Sum_probs=23.4

Q ss_pred             EEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             289976649999976995599999535
Q gi|254780483|r   70 RVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        70 ~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      .|+|||+.++++||...|.+.++.-++
T Consensus         2 di~ieN~~~~l~Fd~~tG~L~si~~~~   28 (282)
T 1o7d_D            2 DLVIQNEYLRARFDPNTGLLMELENLE   28 (282)
T ss_dssp             CCEEECSSEEEEECTTTCSEEEEEEC-
T ss_pred             CEEEECCEEEEEEECCCCCEEEEEECC
T ss_conf             189967879999969998199999877


No 15 
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}
Probab=62.91  E-value=5.6  Score=16.67  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             CCCEEEEECCE-EEEEEECCCCEEEEEEECC
Q ss_conf             58728997664-9999976995599999535
Q gi|254780483|r   67 MSPRVELKNPS-LIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        67 ~~~~I~Iend~-l~i~is~~GG~I~~~~LK~   96 (581)
                      +-+.|+++|+. ++++|.+.||.|.++.+++
T Consensus         9 ~~~~~tl~n~~g~~~~i~~~GA~l~~l~~~~   39 (342)
T 1yga_A            9 KYGVITIGDEKKFQATIAPLGATLVDLKVNG   39 (342)
T ss_dssp             TTCCEEEEETTTEEEEEETBTTEEEEEEETT
T ss_pred             EEEEEEEECCCCEEEEEECCCEEEEEEEECC
T ss_conf             5899999789964999987890999999999


No 16 
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* 3ag3_D* ...
Probab=58.91  E-value=3.3  Score=18.37  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             8778889999973145115678999999985
Q gi|254780483|r  390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYK  420 (581)
Q Consensus       390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~  420 (581)
                      |.+.|++.+|+||=|.|=.+--.+|-.+||+
T Consensus        31 ~e~t~~i~aLreKEKgdWk~LS~eEKkalYr   61 (147)
T 1v54_D           31 KNLSASQKALKEKEKASWSSLSIDEKVELYR   61 (147)
T ss_dssp             CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf             1279999999998509966579999999999


No 17 
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=54.85  E-value=7.6  Score=15.73  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             CEEEEECCE-EEEEEECCCCEEEEEEECC
Q ss_conf             728997664-9999976995599999535
Q gi|254780483|r   69 PRVELKNPS-LIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~   96 (581)
                      +.++++|+. ++++|.+.||.|+++.+.+
T Consensus       374 ~~~tl~n~~~~~v~~~~~Ga~i~~~~~~~  402 (699)
T 1z45_A          374 RFVTIGAGTRFQATFANLGASIVDLKVNG  402 (699)
T ss_dssp             EEEEESTTSSEEEEEESBTTCEEEEEETT
T ss_pred             EEEEEECCCCEEEEEEECCCEEEEECCCC
T ss_conf             79999658847999981685899976199


No 18 
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=41.71  E-value=11  Score=14.63  Aligned_cols=33  Identities=9%  Similarity=0.487  Sum_probs=24.7

Q ss_pred             HHHHHHHHCCCCHHHHHH--HHHHHHHHHCCCCHHH
Q ss_conf             899999731451156789--9999998504878678
Q gi|254780483|r  395 KIDELREKFKQSPPQVLQ--KAMIQLYKTHNINPLA  428 (581)
Q Consensus       395 ~i~~i~ekyk~d~~~~~~--~e~m~ly~~~~vnP~~  428 (581)
                      =++++|+++.||| .+-+  .++|..|+.+.++..+
T Consensus        13 yl~kVK~rF~d~p-~~Y~~FL~il~~f~~~~i~~~~   47 (85)
T 1e91_A           13 YVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKG   47 (85)
T ss_dssp             HHHHHHHHTSSCH-HHHHHHHHHHHHHHHTTCSSSC
T ss_pred             HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999983593-9999999999999971345444


No 19 
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=36.75  E-value=13  Score=13.92  Aligned_cols=33  Identities=9%  Similarity=0.487  Sum_probs=24.4

Q ss_pred             HHHHHHHHCCCCHHHHHH--HHHHHHHHHCCCCHHH
Q ss_conf             899999731451156789--9999998504878678
Q gi|254780483|r  395 KIDELREKFKQSPPQVLQ--KAMIQLYKTHNINPLA  428 (581)
Q Consensus       395 ~i~~i~ekyk~d~~~~~~--~e~m~ly~~~~vnP~~  428 (581)
                      =++++|+++.||| .+-.  -++|..|+.+.+++-+
T Consensus        13 yl~kVK~rF~d~p-~~Y~~FL~il~~f~~~~i~~~~   47 (105)
T 2f05_A           13 YVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKG   47 (105)
T ss_dssp             HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999982585-9999999999999971456544


No 20 
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=29.60  E-value=18  Score=12.99  Aligned_cols=34  Identities=15%  Similarity=0.343  Sum_probs=25.0

Q ss_pred             HHHHHHHHCCCCHHH-HHHHHHHHHHHHCCCCHHH
Q ss_conf             899999731451156-7899999998504878678
Q gi|254780483|r  395 KIDELREKFKQSPPQ-VLQKAMIQLYKTHNINPLA  428 (581)
Q Consensus       395 ~i~~i~ekyk~d~~~-~~~~e~m~ly~~~~vnP~~  428 (581)
                      =++++|+++.|+|.. ..=.++|..|+++.+++..
T Consensus        16 fl~kVK~~f~d~p~~Y~~FL~il~~~~~~~~~~~~   50 (80)
T 2cr7_A           16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPG   50 (80)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             99999999823859999999999999867998999


No 21 
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B
Probab=28.61  E-value=19  Score=12.87  Aligned_cols=31  Identities=13%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             HHHHHHHHCCCCHHHHHH--HHHHHHHHHCCCCH
Q ss_conf             899999731451156789--99999985048786
Q gi|254780483|r  395 KIDELREKFKQSPPQVLQ--KAMIQLYKTHNINP  426 (581)
Q Consensus       395 ~i~~i~ekyk~d~~~~~~--~e~m~ly~~~~vnP  426 (581)
                      =++++|++|.|+| .+-+  .++|.-|+.+.++.
T Consensus        16 yl~kVK~rF~d~p-~~Y~~FL~il~~f~~~~i~~   48 (89)
T 1g1e_B           16 YVNKIKNRFQGQP-DIYKAFLEILHTYQKEQRNA   48 (89)
T ss_dssp             HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999982492-99999999999998656674


No 22 
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=27.64  E-value=19  Score=12.76  Aligned_cols=14  Identities=21%  Similarity=0.406  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             32016399999999
Q gi|254780483|r  356 LVGNFGIAIMLTTV  369 (581)
Q Consensus       356 ~i~NyGiaIIllTi  369 (581)
                      -+|-||++|..+-+
T Consensus         4 r~gtw~~~ilcmll   17 (30)
T 1z65_A            4 RLGTWWVAILCMLL   17 (30)
T ss_dssp             SCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             11008999999999


No 23 
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides fragilis, structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=27.08  E-value=20  Score=12.69  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHC
Q ss_conf             16399999999--9999888999999-------------9999988877888999997-314511567899999998504
Q gi|254780483|r  359 NFGIAIMLTTV--FVKLLFFPLAKKQ-------------YVSTANMKNIQPKIDELRE-KFKQSPPQVLQKAMIQLYKTH  422 (581)
Q Consensus       359 NyGiaIIllTi--likli~~PLt~ks-------------~~Sm~kM~~lqP~i~~i~e-kyk~d~~~~~~~e~m~ly~~~  422 (581)
                      ||-++.-+...  -|=-++.|++.+.             -.||+||-..--.+-++.. ++.-| +++++..+|+|+++-
T Consensus       133 ~~~ls~~~~e~kq~ifdiLsP~a~qAE~~lL~d~PLKeqIia~r~m~~~~q~i~~lyark~~~D-~~rl~~k~~el~~ql  211 (270)
T 3iee_A          133 NYQLSTQMSEYKQNIFDILSPFTEQAELVLLVDNPLKAQIMSVRKMSSTMQSILNLYARKHRMD-GPRIDLKVAELTKQL  211 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHTCTTSCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHH
T ss_conf             9999999999998899981388887899997279638999999999999999999862213872-689999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             878678899999999999999999987698
Q gi|254780483|r  423 NINPLAGCWPILLQIPVFFAIYKVISISLE  452 (581)
Q Consensus       423 ~vnP~~GClP~l~q~p~~~a~~~~~~~~ie  452 (581)
                      ..+   +-||..---+-=.--|..|..++|
T Consensus       212 ~aA---~Klp~~~g~eeE~k~y~~FL~~v~  238 (270)
T 3iee_A          212 DAA---KKLPVVNGHEGEMKSYQAFLSQVE  238 (270)
T ss_dssp             HHH---HTSCCCTTCHHHHHHHHHHHHHHH
T ss_pred             HHH---CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             872---389987674989999999999999


No 24 
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=26.42  E-value=20  Score=12.61  Aligned_cols=39  Identities=15%  Similarity=0.351  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHH----HHHCCCCHHH---HHH-HHHHHHHHHCC
Q ss_conf             999888778889999----9731451156---789-99999985048
Q gi|254780483|r  385 STANMKNIQPKIDEL----REKFKQSPPQ---VLQ-KAMIQLYKTHN  423 (581)
Q Consensus       385 Sm~kM~~lqP~i~~i----~ekyk~d~~~---~~~-~e~m~ly~~~~  423 (581)
                      ||.+++.|+-+|++=    +++++-+|.+   +.+ +|+-++||++.
T Consensus         2 ~Me~~~~lr~elK~WE~~F~~~~gRkP~k~DIk~~p~eI~~~YK~Y~   48 (56)
T 2kmu_A            2 SMERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYR   48 (56)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHH
T ss_conf             07889999999999999999982899989988828999999999999


No 25 
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=25.74  E-value=21  Score=12.52  Aligned_cols=122  Identities=11%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             CCCEEEEECCE--EEEEEE-CCCCEEEEEEECCCCCCCC--------CCCC---CEEEECCCCCCCCCEEEEECCCCCCC
Q ss_conf             58728997664--999997-6995599999535713447--------8877---26885456665531000001347877
Q gi|254780483|r   67 MSPRVELKNPS--LIGSIN-LKGAQFDDLNLRGYHLDVS--------SNSP---IVTLLSPSNTKNAYFAELDYVSTANN  132 (581)
Q Consensus        67 ~~~~I~Iend~--l~i~is-~~GG~I~~~~LK~Y~~~~~--------~ds~---~v~Ll~~~~~~~~y~~~~G~~~~~~~  132 (581)
                      ...++.++|+.  ++++|. ..||.|.+++...- +-+.        ...+   .+-++.|--++   +..-.+...+..
T Consensus        10 ~~~t~~l~~~~~~~~~~v~P~~G~~i~s~~~~g~-e~L~~~~~~~~~~~~~~~gG~p~lfP~~nR---i~~~~~~~~g~~   85 (289)
T 3k25_A           10 RPLTYHLEDDQSLARLSLVPGRGGLVTEWTVQGQ-PILYFDRERFQDPSLSVRGGIPILFPICGN---LPQDQFNHAGKS   85 (289)
T ss_dssp             BCCEEEEEETTTTEEEEEEGGGTSEEEEEEETTE-ECBCBCTTGGGSTTSCCCBSBCEEBSCSSC---CGGGEEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCE-EEECCCCHHHHCCCCCCCCCCEEEEEEECC---CCCCEEEECCEE
T ss_conf             9889999918984899988017989999997999-997689179737888637898699987088---689988689989


Q ss_pred             CCCCCCCC----CEECCCCCCCCCCCCCEEEEEC--------CCCEEEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf             54333432----1001566656666650477415--------88426999997168835899986315766642
Q gi|254780483|r  133 IELPNSNT----VWNLISGKILTPTTPIKLVFKN--------ANNILFERTISLDEHYLFKIVDTVTNNSIDQI  194 (581)
Q Consensus       133 ~~~p~~~~----~~~~~~~~~l~~~~~v~l~~~~--------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i  194 (581)
                      ..+|.+..    .|..... .......+.+....        .....++.+|++.++- +.++.+++|.++.+.
T Consensus        86 ~~L~~hg~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~P~~~~~~~~~~L~~~~-l~~~~~v~N~~~~~~  157 (289)
T 3k25_A           86 YRLKQHGFARDLPWEVIGQ-QTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGHS-LRIEQRIANLGDQRM  157 (289)
T ss_dssp             EECCTTBSGGGSCCEEEEE-ECSSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEETTE-EEEEEEEEECSSSCE
T ss_pred             EECCCCCCCCCCEEEEEEE-CCCCCCEEEEEEECCCCHHCCCCCCCEEEEEEEEECCC-EEEEEEEECCCCCCE
T ss_conf             7646667866761586300-03566305899866721111289862799999992463-036787881799874


No 26 
>1ybx_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=25.30  E-value=21  Score=12.46  Aligned_cols=21  Identities=5%  Similarity=-0.080  Sum_probs=9.8

Q ss_pred             CEEEEECCCCEEEEEEEEECCCCE
Q ss_conf             047741588426999997168835
Q gi|254780483|r  156 IKLVFKNANNILFERTISLDEHYL  179 (581)
Q Consensus       156 v~l~~~~~~g~~i~kt~t~~~~Y~  179 (581)
                      .+++.+.++|.+   +.+++.++.
T Consensus        67 ~~veg~sg~GlV---kVtvnG~~~   87 (143)
T 1ybx_A           67 KTVEASAGGGAV---TVVATGRKD   87 (143)
T ss_dssp             CEEEEEETTTTE---EEEEETTCC
T ss_pred             CEEEEEECCCEE---EEEEECCEE
T ss_conf             699999889879---999978916


No 27 
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=23.72  E-value=23  Score=12.26  Aligned_cols=38  Identities=21%  Similarity=0.418  Sum_probs=26.9

Q ss_pred             HHHHHHHHHH-CCCCHHHHHHH----------HHHHHHHHHHHHHHHHH
Q ss_conf             9999999850-48786788999----------99999999999999987
Q gi|254780483|r  412 QKAMIQLYKT-HNINPLAGCWP----------ILLQIPVFFAIYKVISI  449 (581)
Q Consensus       412 ~~e~m~ly~~-~~vnP~~GClP----------~l~q~p~~~a~~~~~~~  449 (581)
                      ..++-+|||+ +|+.|=.|-||          --|+--+|+.+|..+..
T Consensus        37 ~~rl~rLykEl~G~spPkG~lP~S~dWf~tw~~niHsSlf~~iY~~l~~   85 (192)
T 2avu_E           37 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK   85 (192)
T ss_dssp             HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999998608999998688876435555423689999999999974


No 28 
>3h9p_A Putative triphosphoribosyl-dephospho-COA synthase; structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.30A {Archaeoglobus fulgidus dsm 4304}
Probab=23.04  E-value=23  Score=12.17  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985048786788999999999999999
Q gi|254780483|r  413 KAMIQLYKTHNINPLAGCWPILLQIPVFFAIY  444 (581)
Q Consensus       413 ~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~  444 (581)
                      .+.=+.+++.++|| |||--+| =.-||+++.
T Consensus       216 ~~ld~~~~~~~lsP-GgsADLl-A~tlfl~~l  245 (249)
T 3h9p_A          216 KELDEKLLKDGANP-GTIADLT-ASSIFLALA  245 (249)
T ss_dssp             HHHHHHHHHHTCCC-HHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHCCCCC-CHHHHHH-HHHHHHHHH
T ss_conf             99999999889796-3799999-999999996


No 29 
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=22.22  E-value=24  Score=12.06  Aligned_cols=18  Identities=28%  Similarity=0.431  Sum_probs=7.3

Q ss_pred             EEEEEEECCCCCCCCCCC
Q ss_conf             899986315766642224
Q gi|254780483|r  180 FKIVDTVTNNSIDQIRFS  197 (581)
Q Consensus       180 i~i~~~v~N~s~~~i~~~  197 (581)
                      +.++.+|+|++++++.+.
T Consensus       266 l~~~~~VTN~g~~~v~lg  283 (382)
T 1yew_A          266 MRMKLTITNHGNSPIRLG  283 (382)
T ss_dssp             EEEEEEEEECSSSCEEEE
T ss_pred             EEEEEEEECCCCCCEEEE
T ss_conf             999999974898756872


Done!