Query gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62] Match_columns 581 No_of_seqs 197 out of 1773 Neff 8.0 Searched_HMMs 13730 Date Wed Jun 1 06:02:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780483.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1so0a_ b.30.5.4 (A:) Galactos 93.0 0.24 1.8E-05 24.9 11.5 28 69-96 22-49 (344) 2 d1lura_ b.30.5.4 (A:) Aldose 1 87.2 0.72 5.2E-05 21.5 11.2 28 69-96 3-31 (329) 3 d1nsza_ b.30.5.4 (A:) Galactos 83.8 1 7.4E-05 20.4 11.3 28 69-96 12-40 (340) 4 d1z45a1 b.30.5.4 (A:358-699) G 81.0 1.3 9.3E-05 19.6 8.8 32 66-97 14-46 (342) 5 d1jova_ b.30.5.7 (A:) Hypothet 77.9 1.6 0.00012 19.0 10.1 30 67-96 20-49 (269) 6 d1v54d_ f.23.1.1 (D:) Mitochon 56.6 2.2 0.00016 17.9 1.6 32 390-421 28-59 (144) 7 g1o7d.2 b.30.5.6 (C:488-585,D: 34.0 8.8 0.00064 13.5 14.1 30 67-96 93-122 (490) 8 d1jz8a4 b.30.5.1 (A:731-1023) 33.2 9.1 0.00066 13.4 5.0 33 64-96 10-42 (293) 9 d2avue1 e.64.1.1 (E:5-160) Fla 28.7 10 0.00074 13.0 1.3 38 412-449 33-81 (156) 10 d2f05a1 a.59.1.1 (A:1-85) Sin3 28.7 10 0.00073 13.1 1.3 32 395-427 13-46 (85) 11 d1k1xa2 b.30.5.8 (A:385-659) 4 21.5 14 0.001 12.0 4.9 28 69-96 15-43 (275) No 1 >d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Probab=92.96 E-value=0.24 Score=24.89 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=25.8 Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 7289976649999976995599999535 Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) .+++|+|+.++++|.+.||.|.++.+++ T Consensus 22 ~~~tl~n~~l~v~i~~~GA~i~~l~~~d 49 (344) T d1so0a_ 22 EKFQLQSDLLRVDIISWGCTITALEVKD 49 (344) T ss_dssp EEEEEECSSCEEEEETBTTEEEEEEEEC T ss_pred EEEEEECCCEEEEEECCCCEEEEEEEEC T ss_conf 9999986999999978690999999888 No 2 >d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Probab=87.18 E-value=0.72 Score=21.46 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.1 Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECC Q ss_conf 728997664-9999976995599999535 Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~ 96 (581) -.|+++|+. ++++|.+.||.|.++.+++ T Consensus 3 ~~i~l~N~~g~~v~i~~~GA~i~~l~~pd 31 (329) T d1lura_ 3 GFIEIANKQGLTATLLPFGATLAKLTFPD 31 (329) T ss_dssp CCEEEECSSSCEEEEETBTTEEEEEEEEC T ss_pred CEEEEECCCCCEEEEECCCCEEEEEEEEC T ss_conf 67999979993999988792999999888 No 3 >d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Probab=83.83 E-value=1 Score=20.36 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.4 Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECC Q ss_conf 728997664-9999976995599999535 Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~ 96 (581) ..++++|+. ++++|.+.||.|.++..+. T Consensus 12 ~~~tl~N~~gl~v~i~~~GA~i~~~~~~~ 40 (340) T d1nsza_ 12 DLISLTNKAGVTISFTNLGARIVDWQKDG 40 (340) T ss_dssp EEEEEECTTSCEEEEETBTTEEEEEEETT T ss_pred EEEEEECCCCCEEEEECCCEEEEEECCCC T ss_conf 69999949981999979995999820499 No 4 >d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=81.03 E-value=1.3 Score=19.63 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=27.1 Q ss_pred CCCCEEEEECCE-EEEEEECCCCEEEEEEECCC Q ss_conf 458728997664-99999769955999995357 Q gi|254780483|r 66 SMSPRVELKNPS-LIGSINLKGAQFDDLNLRGY 97 (581) Q Consensus 66 ~~~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y 97 (581) ..++.|+++|.. ++++|.+.||.|.++.+++- T Consensus 14 ~~~~~~tl~n~~~~~v~i~~~GA~i~~l~~~~~ 46 (342) T d1z45a1 14 YDARFVTIGAGTRFQATFANLGASIVDLKVNGQ 46 (342) T ss_dssp TTSEEEEESTTSSEEEEEESBTTCEEEEEETTE T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEEECCE T ss_conf 416999998999669999788909999989991 No 5 >d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Probab=77.85 E-value=1.6 Score=18.95 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=25.6 Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 587289976649999976995599999535 Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) .-+.++|+|+..+++|+..||.|.+++-++ T Consensus 20 ~l~~i~i~~~~~~a~i~~~Ga~l~s~~~~~ 49 (269) T d1jova_ 20 DIPVLHLKHAVGTAKISLQGAQLISWKPQN 49 (269) T ss_dssp TEEEEEEEETTEEEEEETBTTEEEEEEETT T ss_pred CCCEEEEECCCEEEEEECCCCEEEEEEECC T ss_conf 954899948988999989998999999799 No 6 >d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Probab=56.57 E-value=2.2 Score=17.91 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 87788899999731451156789999999850 Q gi|254780483|r 390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYKT 421 (581) Q Consensus 390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~ 421 (581) |.+.|++.+|+||-|.|=.+--.+|-.+||+- T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144) T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144) T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHH T ss_conf 21799999999985099666699999999999 No 7 >g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]} Probab=34.02 E-value=8.8 Score=13.50 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=25.0 Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 587289976649999976995599999535 Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) .++.+++||+.++++|+..||.+.+..-|+ T Consensus 93 ~~~~~~iEN~~~~v~~d~~g~~i~s~~~k~ 122 (490) T g1o7d.2 93 PNRDLVIQNEYLRARFDPNTGLLMELENLE 122 (490) T ss_dssp C-CCCEEECSSEEEEECTTTCSEEEEEEC- T ss_pred CCCCEEECCCEEEEEECCCCCEEEEEEECC T ss_conf 899558617579999908998499999636 No 8 >d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]} Probab=33.19 E-value=9.1 Score=13.40 Aligned_cols=33 Identities=3% Similarity=-0.087 Sum_probs=27.7 Q ss_pred CCCCCCEEEEECCEEEEEEECCCCEEEEEEECC Q ss_conf 014587289976649999976995599999535 Q gi|254780483|r 64 ALSMSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581) Q Consensus 64 ~~~~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581) ...++..++|+.+.++.+||...|.|.++...+ T Consensus 10 i~~~~~~i~i~~~~~~~~Fdk~tG~l~s~~~~g 42 (293) T d1jz8a4 10 LTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGD 42 (293) T ss_dssp EEECSSEEEEEETTEEEEEETTTCSEEEEEETT T ss_pred EEEECCEEEEEECCEEEEEECCCCEEEEEEECC T ss_conf 487088799997999999987744399999999 No 9 >d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]} Probab=28.69 E-value=10 Score=13.04 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=27.9 Q ss_pred HHHHHHHHHH-CCCCHHHHHHH----------HHHHHHHHHHHHHHHHH Q ss_conf 9999999850-48786788999----------99999999999999987 Q gi|254780483|r 412 QKAMIQLYKT-HNINPLAGCWP----------ILLQIPVFFAIYKVISI 449 (581) Q Consensus 412 ~~e~m~ly~~-~~vnP~~GClP----------~l~q~p~~~a~~~~~~~ 449 (581) ..++-+|||+ +|+.|=.|=|| --|+--+|+++|..+.. T Consensus 33 ~~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156) T d2avue1 33 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156) T ss_dssp HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999728999999699850343345423689999999999975 No 10 >d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Probab=28.68 E-value=10 Score=13.11 Aligned_cols=32 Identities=9% Similarity=0.519 Sum_probs=23.1 Q ss_pred HHHHHHHHCCCCHHHHHHH--HHHHHHHHCCCCHH Q ss_conf 8999997314511567899--99999850487867 Q gi|254780483|r 395 KIDELREKFKQSPPQVLQK--AMIQLYKTHNINPL 427 (581) Q Consensus 395 ~i~~i~ekyk~d~~~~~~~--e~m~ly~~~~vnP~ 427 (581) =++++|+++.++| .+-++ +.|..|+++.+... T Consensus 13 yl~kVK~rf~~~p-~~Y~~FL~il~~f~~~~i~~~ 46 (85) T d2f05a1 13 YVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTK 46 (85) T ss_dssp HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSS T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999983587-999999999999998611333 No 11 >d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Probab=21.51 E-value=14 Score=11.96 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.8 Q ss_pred CEEEEECCEEEEEEECC-CCEEEEEEECC Q ss_conf 72899766499999769-95599999535 Q gi|254780483|r 69 PRVELKNPSLIGSINLK-GAQFDDLNLRG 96 (581) Q Consensus 69 ~~I~Iend~l~i~is~~-GG~I~~~~LK~ 96 (581) +.|.++|+.+.+.|++. ||+|.++-+|+ T Consensus 15 ~Ev~l~~~~~~~~~~p~~GG~l~Eld~k~ 43 (275) T d1k1xa2 15 AEIMVENDGFIATIKPHYGGSIFELSSKR 43 (275) T ss_dssp CEEEEECSSEEEEEETTTTTEEEEEEETT T ss_pred CEEEEECCCEEEEEEECCCCEEEEEECCC T ss_conf 11799768689999107798799981255 Done!