Query         gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 581
No_of_seqs    197 out of 1773
Neff          8.0 
Searched_HMMs 13730
Date          Wed Jun  1 06:02:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780483.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1so0a_ b.30.5.4 (A:) Galactos  93.0    0.24 1.8E-05   24.9  11.5   28   69-96     22-49  (344)
  2 d1lura_ b.30.5.4 (A:) Aldose 1  87.2    0.72 5.2E-05   21.5  11.2   28   69-96      3-31  (329)
  3 d1nsza_ b.30.5.4 (A:) Galactos  83.8       1 7.4E-05   20.4  11.3   28   69-96     12-40  (340)
  4 d1z45a1 b.30.5.4 (A:358-699) G  81.0     1.3 9.3E-05   19.6   8.8   32   66-97     14-46  (342)
  5 d1jova_ b.30.5.7 (A:) Hypothet  77.9     1.6 0.00012   19.0  10.1   30   67-96     20-49  (269)
  6 d1v54d_ f.23.1.1 (D:) Mitochon  56.6     2.2 0.00016   17.9   1.6   32  390-421    28-59  (144)
  7 g1o7d.2 b.30.5.6 (C:488-585,D:  34.0     8.8 0.00064   13.5  14.1   30   67-96     93-122 (490)
  8 d1jz8a4 b.30.5.1 (A:731-1023)   33.2     9.1 0.00066   13.4   5.0   33   64-96     10-42  (293)
  9 d2avue1 e.64.1.1 (E:5-160) Fla  28.7      10 0.00074   13.0   1.3   38  412-449    33-81  (156)
 10 d2f05a1 a.59.1.1 (A:1-85) Sin3  28.7      10 0.00073   13.1   1.3   32  395-427    13-46  (85)
 11 d1k1xa2 b.30.5.8 (A:385-659) 4  21.5      14   0.001   12.0   4.9   28   69-96     15-43  (275)

No 1  
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.96  E-value=0.24  Score=24.89  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             CEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             7289976649999976995599999535
Q gi|254780483|r   69 PRVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      .+++|+|+.++++|.+.||.|.++.+++
T Consensus        22 ~~~tl~n~~l~v~i~~~GA~i~~l~~~d   49 (344)
T d1so0a_          22 EKFQLQSDLLRVDIISWGCTITALEVKD   49 (344)
T ss_dssp             EEEEEECSSCEEEEETBTTEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCEEEEEEEEC
T ss_conf             9999986999999978690999999888


No 2  
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=87.18  E-value=0.72  Score=21.46  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=25.1

Q ss_pred             CEEEEECCE-EEEEEECCCCEEEEEEECC
Q ss_conf             728997664-9999976995599999535
Q gi|254780483|r   69 PRVELKNPS-LIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~   96 (581)
                      -.|+++|+. ++++|.+.||.|.++.+++
T Consensus         3 ~~i~l~N~~g~~v~i~~~GA~i~~l~~pd   31 (329)
T d1lura_           3 GFIEIANKQGLTATLLPFGATLAKLTFPD   31 (329)
T ss_dssp             CCEEEECSSSCEEEEETBTTEEEEEEEEC
T ss_pred             CEEEEECCCCCEEEEECCCCEEEEEEEEC
T ss_conf             67999979993999988792999999888


No 3  
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]}
Probab=83.83  E-value=1  Score=20.36  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=24.4

Q ss_pred             CEEEEECCE-EEEEEECCCCEEEEEEECC
Q ss_conf             728997664-9999976995599999535
Q gi|254780483|r   69 PRVELKNPS-LIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~   96 (581)
                      ..++++|+. ++++|.+.||.|.++..+.
T Consensus        12 ~~~tl~N~~gl~v~i~~~GA~i~~~~~~~   40 (340)
T d1nsza_          12 DLISLTNKAGVTISFTNLGARIVDWQKDG   40 (340)
T ss_dssp             EEEEEECTTSCEEEEETBTTEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEECCCEEEEEECCCC
T ss_conf             69999949981999979995999820499


No 4  
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=81.03  E-value=1.3  Score=19.63  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=27.1

Q ss_pred             CCCCEEEEECCE-EEEEEECCCCEEEEEEECCC
Q ss_conf             458728997664-99999769955999995357
Q gi|254780483|r   66 SMSPRVELKNPS-LIGSINLKGAQFDDLNLRGY   97 (581)
Q Consensus        66 ~~~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y   97 (581)
                      ..++.|+++|.. ++++|.+.||.|.++.+++-
T Consensus        14 ~~~~~~tl~n~~~~~v~i~~~GA~i~~l~~~~~   46 (342)
T d1z45a1          14 YDARFVTIGAGTRFQATFANLGASIVDLKVNGQ   46 (342)
T ss_dssp             TTSEEEEESTTSSEEEEEESBTTCEEEEEETTE
T ss_pred             CEEEEEEEECCCCEEEEEECCCEEEEEEEECCE
T ss_conf             416999998999669999788909999989991


No 5  
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]}
Probab=77.85  E-value=1.6  Score=18.95  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=25.6

Q ss_pred             CCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             587289976649999976995599999535
Q gi|254780483|r   67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      .-+.++|+|+..+++|+..||.|.+++-++
T Consensus        20 ~l~~i~i~~~~~~a~i~~~Ga~l~s~~~~~   49 (269)
T d1jova_          20 DIPVLHLKHAVGTAKISLQGAQLISWKPQN   49 (269)
T ss_dssp             TEEEEEEEETTEEEEEETBTTEEEEEEETT
T ss_pred             CCCEEEEECCCEEEEEECCCCEEEEEEECC
T ss_conf             954899948988999989998999999799


No 6  
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=56.57  E-value=2.2  Score=17.91  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             87788899999731451156789999999850
Q gi|254780483|r  390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYKT  421 (581)
Q Consensus       390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~  421 (581)
                      |.+.|++.+|+||-|.|=.+--.+|-.+||+-
T Consensus        28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri   59 (144)
T d1v54d_          28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL   59 (144)
T ss_dssp             CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHH
T ss_conf             21799999999985099666699999999999


No 7  
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.02  E-value=8.8  Score=13.50  Aligned_cols=30  Identities=10%  Similarity=0.057  Sum_probs=25.0

Q ss_pred             CCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             587289976649999976995599999535
Q gi|254780483|r   67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      .++.+++||+.++++|+..||.+.+..-|+
T Consensus        93 ~~~~~~iEN~~~~v~~d~~g~~i~s~~~k~  122 (490)
T g1o7d.2          93 PNRDLVIQNEYLRARFDPNTGLLMELENLE  122 (490)
T ss_dssp             C-CCCEEECSSEEEEECTTTCSEEEEEEC-
T ss_pred             CCCCEEECCCEEEEEECCCCCEEEEEEECC
T ss_conf             899558617579999908998499999636


No 8  
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]}
Probab=33.19  E-value=9.1  Score=13.40  Aligned_cols=33  Identities=3%  Similarity=-0.087  Sum_probs=27.7

Q ss_pred             CCCCCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf             014587289976649999976995599999535
Q gi|254780483|r   64 ALSMSPRVELKNPSLIGSINLKGAQFDDLNLRG   96 (581)
Q Consensus        64 ~~~~~~~I~Iend~l~i~is~~GG~I~~~~LK~   96 (581)
                      ...++..++|+.+.++.+||...|.|.++...+
T Consensus        10 i~~~~~~i~i~~~~~~~~Fdk~tG~l~s~~~~g   42 (293)
T d1jz8a4          10 LTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGD   42 (293)
T ss_dssp             EEECSSEEEEEETTEEEEEETTTCSEEEEEETT
T ss_pred             EEEECCEEEEEECCEEEEEECCCCEEEEEEECC
T ss_conf             487088799997999999987744399999999


No 9  
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=28.69  E-value=10  Score=13.04  Aligned_cols=38  Identities=21%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             HHHHHHHHHH-CCCCHHHHHHH----------HHHHHHHHHHHHHHHHH
Q ss_conf             9999999850-48786788999----------99999999999999987
Q gi|254780483|r  412 QKAMIQLYKT-HNINPLAGCWP----------ILLQIPVFFAIYKVISI  449 (581)
Q Consensus       412 ~~e~m~ly~~-~~vnP~~GClP----------~l~q~p~~~a~~~~~~~  449 (581)
                      ..++-+|||+ +|+.|=.|=||          --|+--+|+++|..+..
T Consensus        33 ~~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~   81 (156)
T d2avue1          33 RGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK   81 (156)
T ss_dssp             HHHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999728999999699850343345423689999999999975


No 10 
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.68  E-value=10  Score=13.11  Aligned_cols=32  Identities=9%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             HHHHHHHHCCCCHHHHHHH--HHHHHHHHCCCCHH
Q ss_conf             8999997314511567899--99999850487867
Q gi|254780483|r  395 KIDELREKFKQSPPQVLQK--AMIQLYKTHNINPL  427 (581)
Q Consensus       395 ~i~~i~ekyk~d~~~~~~~--e~m~ly~~~~vnP~  427 (581)
                      =++++|+++.++| .+-++  +.|..|+++.+...
T Consensus        13 yl~kVK~rf~~~p-~~Y~~FL~il~~f~~~~i~~~   46 (85)
T d2f05a1          13 YVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTK   46 (85)
T ss_dssp             HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999983587-999999999999998611333


No 11 
>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=21.51  E-value=14  Score=11.96  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=24.8

Q ss_pred             CEEEEECCEEEEEEECC-CCEEEEEEECC
Q ss_conf             72899766499999769-95599999535
Q gi|254780483|r   69 PRVELKNPSLIGSINLK-GAQFDDLNLRG   96 (581)
Q Consensus        69 ~~I~Iend~l~i~is~~-GG~I~~~~LK~   96 (581)
                      +.|.++|+.+.+.|++. ||+|.++-+|+
T Consensus        15 ~Ev~l~~~~~~~~~~p~~GG~l~Eld~k~   43 (275)
T d1k1xa2          15 AEIMVENDGFIATIKPHYGGSIFELSSKR   43 (275)
T ss_dssp             CEEEEECSSEEEEEETTTTTEEEEEEETT
T ss_pred             CEEEEECCCEEEEEEECCCCEEEEEECCC
T ss_conf             11799768689999107798799981255


Done!