RPSBLAST alignment for GI: 254780483 and conserved domain: TIGR03593

>gnl|CDD|163342 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. Length = 366
 Score =  245 bits (627), Expect = 3e-65
 Identities = 102/370 (27%), Positives = 164/370 (44%), Gaps = 23/370 (6%)

Query: 6   NYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLI------- 58
              +AIALS +I   WQ +   P                Q      + AA          
Sbjct: 3   RLILAIALSFVIFLLWQAWQSDPGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAA 62

Query: 59  -DDRAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTK 117
                 A + + R+ +K   L  SI+ KG   D L L+ Y   +  +SP V LLS    +
Sbjct: 63  AAAADAAAATAKRITVKTDVLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLS-DGAE 121

Query: 118 NAYFAELDYV-STANNIELPNSNTVWNLISGKI-LTP-TTPIKLVFKNANNILFERTISL 174
             Y A+   + +   ++ LP   TVW    G+  LTP   P+ L + N+N +   +T + 
Sbjct: 122 RLYVAQSGLIGANGADLALPGHRTVWQAEGGEYTLTPGQLPVTLTWDNSNGVTVTKTYTF 181

Query: 175 DEH-YLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVL---GDKSLV 230
           D   YL  +   VTNN    +  S  G++ R    T  +T+ + E F         +   
Sbjct: 182 DRDSYLIDVEYKVTNNGDAPVSLSLYGQLKRDLSPTEKSTYFLHETFTGAAYYTDGEKYQ 241

Query: 231 EQKYSDIEKSSISNFHES-NSWLGISDKYWASVFIPSKETSFHSQFKYLSD-GHARYQAK 288
           +  + DIEK  ++   +    W+G+   Y+AS +IP   +   + F Y    G+  Y A 
Sbjct: 242 KVSFKDIEKKKLNVETKGGAGWVGMLQHYFASAWIPPAGSDGTTAFYYGRKLGNNVYIAG 301

Query: 289 FSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFM 348
           F +  +T+ PG+S T  + L+AG KE   +         P  ++ +D+GW +FIAKP+F 
Sbjct: 302 FVSPVVTVAPGQSATIKSRLYAGPKEQDVLKAIA-----PGLDLAVDYGWLWFIAKPLFW 356

Query: 349 LMSYFYNLVG 358
           L+ +F++LVG
Sbjct: 357 LLDFFHSLVG 366