RPSBLAST alignment for GI: 254780483 and conserved domain: TIGR03593
>gnl|CDD|163342 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. Length = 366
Score = 245 bits (627), Expect = 3e-65
Identities = 102/370 (27%), Positives = 164/370 (44%), Gaps = 23/370 (6%)
Query: 6 NYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLI------- 58
+AIALS +I WQ + P Q + AA
Sbjct: 3 RLILAIALSFVIFLLWQAWQSDPGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAA 62
Query: 59 -DDRAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTK 117
A + + R+ +K L SI+ KG D L L+ Y + +SP V LLS +
Sbjct: 63 AAAADAAAATAKRITVKTDVLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLS-DGAE 121
Query: 118 NAYFAELDYV-STANNIELPNSNTVWNLISGKI-LTP-TTPIKLVFKNANNILFERTISL 174
Y A+ + + ++ LP TVW G+ LTP P+ L + N+N + +T +
Sbjct: 122 RLYVAQSGLIGANGADLALPGHRTVWQAEGGEYTLTPGQLPVTLTWDNSNGVTVTKTYTF 181
Query: 175 DEH-YLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVL---GDKSLV 230
D YL + VTNN + S G++ R T +T+ + E F +
Sbjct: 182 DRDSYLIDVEYKVTNNGDAPVSLSLYGQLKRDLSPTEKSTYFLHETFTGAAYYTDGEKYQ 241
Query: 231 EQKYSDIEKSSISNFHES-NSWLGISDKYWASVFIPSKETSFHSQFKYLSD-GHARYQAK 288
+ + DIEK ++ + W+G+ Y+AS +IP + + F Y G+ Y A
Sbjct: 242 KVSFKDIEKKKLNVETKGGAGWVGMLQHYFASAWIPPAGSDGTTAFYYGRKLGNNVYIAG 301
Query: 289 FSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFM 348
F + +T+ PG+S T + L+AG KE + P ++ +D+GW +FIAKP+F
Sbjct: 302 FVSPVVTVAPGQSATIKSRLYAGPKEQDVLKAIA-----PGLDLAVDYGWLWFIAKPLFW 356
Query: 349 LMSYFYNLVG 358
L+ +F++LVG
Sbjct: 357 LLDFFHSLVG 366