RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780483|ref|YP_003064896.1| putative inner membrane
protein translocase component YidC [Candidatus Liberibacter asiaticus
str. psy62]
(581 letters)
>gnl|CDD|31050 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular
trafficking and secretion].
Length = 314
Score = 234 bits (598), Expect = 5e-62
Identities = 117/335 (34%), Positives = 181/335 (54%), Gaps = 33/335 (9%)
Query: 250 SWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPG--KSITTTNF 307
WLGI Y+AS+ IP G +RYQ+ + + PG S +T
Sbjct: 6 GWLGILQLYFASLLIPRDFGRLEVPS---PGGTSRYQSGLKSKLRLVPPGMKASASTELL 62
Query: 308 LFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVG-NFGIAIML 366
L AG K + + ++ D+GWF+ I P+F L+ + + G N+G++I+L
Sbjct: 63 LLAGPKYVDDLSTSDP------LDLTSDYGWFWNILAPLFPLLLFIDSFSGLNWGLSIIL 116
Query: 367 TTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINP 426
T+ V+LL FPL++K S A M+ +QPKI E++EK+K + Q Q+ M++LYK H +NP
Sbjct: 117 LTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNP 176
Query: 427 LAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPG 486
LAGC P+L+Q+P+F A+Y V+ ++E+R APF GWI DL+ DP I
Sbjct: 177 LAGCLPLLIQMPIFIALYYVLRSTVELRGAPFLGWITDLSLPDPDYIL------------ 224
Query: 487 FMHVGIWPIIMSLSMFIQMKMSP----PPADKGQAMILNWMPVVFVFALSSFPAGLIIYW 542
+ PI+ ++MF+Q K+SP P D Q ++ MP++F F +FPAGL++YW
Sbjct: 225 -----LLPILAGVTMFLQQKLSPRNLSTPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYW 279
Query: 543 SWSNVISIVQQAVIMKMHGAEIGLIDRLRSTFSKN 577
SN+ SI+QQ ++ K + + K
Sbjct: 280 IVSNLFSILQQYILNKPLEKKRTTAREKKKKSKKA 314
>gnl|CDD|145319 pfam02096, 60KD_IMP, 60Kd inner membrane protein.
Length = 194
Score = 212 bits (541), Expect = 3e-55
Identities = 91/213 (42%), Positives = 131/213 (61%), Gaps = 30/213 (14%)
Query: 358 GNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQ 417
GN+G+AI+L T+ V+LL PL KQY S A M+ +QP+I E++EK+K PQ LQ+ M++
Sbjct: 1 GNWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDD-PQKLQQEMMK 59
Query: 418 LYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRH---APFWGWIKDLAAADPTNIF 474
LYK H +NPL GC P+L+Q+P+FFA+Y+V+ E+R A F WIKDL+A DP
Sbjct: 60 LYKEHGVNPLKGCLPMLIQLPIFFALYRVLRNMAELRGLETAGFL-WIKDLSAPDP---- 114
Query: 475 TLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPADKG-------QAMILNWMPVVF 527
I PI+ L+MF+Q K+SP P D +++ MP++F
Sbjct: 115 --------------PYFILPILAGLTMFLQQKLSPKPQDPTDKQQSPQMKIMMYIMPLIF 160
Query: 528 VFALSSFPAGLIIYWSWSNVISIVQQAVIMKMH 560
+F +FPAGL++YW SN+ S+VQQ +I K
Sbjct: 161 LFFFLNFPAGLVLYWIVSNLFSLVQQLLIRKPL 193
>gnl|CDD|36453 KOG1239, KOG1239, KOG1239, Inner membrane protein translocase
involved in respiratory chain assembly
[Posttranslational modification, protein turnover,
chaperones, Intracellular trafficking, secretion, and
vesicular transport].
Length = 372
Score = 51.6 bits (123), Expect = 6e-07
Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 28/241 (11%)
Query: 333 LIDWGWFYFIAKPMFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNI 392
L+ + +A L + +I+ TTV ++ L PL + A + I
Sbjct: 75 LLALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKI 134
Query: 393 QPKIDELREKFK-----QSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVI 447
P++ L E+ + Q+ L K + + P P+ +Q P+F + + I
Sbjct: 135 FPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPV-VQGPLFISFFMAI 193
Query: 448 SISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKM 507
+ P T F L P + I P I ++ + +++
Sbjct: 194 RVMAV----PVPS--------FTTGGLLWFPDLTGPDPLY----ILPGITLATLTLFIEL 237
Query: 508 SPPPADKGQAMILNWMPVVFVFAL------SSFPAGLIIYWSWSNVISIVQQAVIMKMHG 561
++ + + L FP+ + +YW +S V +V ++ + K G
Sbjct: 238 GAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWLFSLVQGLVLRSEVRKKLG 297
Query: 562 A 562
Sbjct: 298 I 298
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 33.1 bits (76), Expect = 0.24
Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 54/149 (36%)
Query: 1 MERNWNY--FVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQT---------------- 42
M+ Y +++ L V W FY Y +E+ N
Sbjct: 1 MKEQSKYAILISLPLIVEKFTVWDVFY-YSSVEDGLKSPNNPDVVQNKASSRMTYGRFLE 59
Query: 43 ------VKQPNQVDNSYAAVL------IDDRAQALSMSPRVEL--KNPSLIGSINLKGAQ 88
+K+ + DN A++ + +R Q + RVEL LI
Sbjct: 60 YLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRI----RVELPVGASELIQ-------- 107
Query: 89 FDDLNLRGYHLDVS-----SNSPIVTLLS 112
L+ ++D S IVT+LS
Sbjct: 108 ----KLKEANIDFDAHPPVLKSNIVTILS 132
>gnl|CDD|34101 COG4394, COG4394, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 370
Score = 31.5 bits (71), Expect = 0.64
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 395 KIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQ 436
K++ +K+ P KA+ + N L+ W +
Sbjct: 294 KLEAFLDKYCPFLPPNTAKALRTFWIAWNAGRLSDDWSYFFK 335
>gnl|CDD|31055 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy
production and conversion].
Length = 161
Score = 29.8 bits (67), Expect = 1.9
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 1 MERNWNYFVAIALSVIIVYAWQNFYVYPRIEEMNNER-KNIQT--------VKQPNQVDN 51
M N + ++ +I+ +V+ I + +ER I ++ +
Sbjct: 2 MNFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLA 61
Query: 52 SYAAVLIDDRAQALSM 67
Y L + R QA +
Sbjct: 62 EYEQELEEAREQASEI 77
>gnl|CDD|32980 COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 211
Score = 29.9 bits (67), Expect = 1.9
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 8 FVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLIDDRAQALSM 67
+ ++ FY+ ++EE+ + +K Q AA L RAQ M
Sbjct: 26 VFCLLAVAAVLGLGYAFYLSGKLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEM 85
Query: 68 SPRV-----ELKN----PSLIGSINLKG 86
R +L + P+L+ +N G
Sbjct: 86 EERFDILLRQLPSDTEMPNLLADVNQAG 113
>gnl|CDD|39294 KOG4091, KOG4091, KOG4091, Transcription factor [Transcription].
Length = 463
Score = 28.0 bits (62), Expect = 6.9
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 88 QFDDLNLRGYHLDVSSNSPIVTL----LSPSNTKNAYFAELDYVSTANNIELPNSNTVWN 143
+ +L + Y L+ +S SP V L ++ N Y L PNS V +
Sbjct: 66 ETSNLGFQ-YVLE-ASTSPAVKLHDETMTYLNKGQFYEITLLENRDLGKFPHPNSKVVKS 123
Query: 144 LI 145
+I
Sbjct: 124 II 125
>gnl|CDD|32460 COG2306, COG2306, Uncharacterized conserved protein [Function
unknown].
Length = 183
Score = 28.0 bits (62), Expect = 6.9
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 247 ESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPGKSITT 304
E WL SD Y F + + + K + E T T
Sbjct: 50 EGQGWLVPSDGYRWVYFAFNGKD--YDILKIYDERGNPQDYYIDVGEYTPREDNIART 105
>gnl|CDD|37300 KOG2089, KOG2089, KOG2089, Metalloendopeptidase family -
saccharolysin & thimet oligopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 718
Score = 28.0 bits (62), Expect = 8.3
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 27/115 (23%)
Query: 388 NMKNIQPKIDELREKFKQS---------------------PPQVLQKAMIQLYKTHNINP 426
+K I+ ++ EL KF ++ PP LQ L K + +
Sbjct: 181 EIKEIKKELSELSIKFSKNVNEDTKKFTFLITDKKELEGLPPSFLQ----SLAKDED-DK 235
Query: 427 LAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILP 481
+G W I L+ P +F + K I + R + + + D N + +L
Sbjct: 236 GSGPWKITLKYPHYFPVMKHCKIR-QTRKTVWRAYNSRASEGDLENSAIIEQLLK 289
>gnl|CDD|33011 COG3198, COG3198, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 172
Score = 27.7 bits (61), Expect = 8.4
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 73 LKNPSLIGSINLKGAQFDD---LNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAEL-DYVS 128
+ +P + + G +FD LNL H ++ V L N + Y A L
Sbjct: 70 VISPDMTAAKEFVGGEFDGKQPLNLLLMHPTRPADDQTVALKPAQNGRAEYEAVLKTLSP 129
Query: 129 TANNIELPNSNTVWNLISGKILTPTTPIKL 158
+EL ++ W + + + +P + L
Sbjct: 130 GHWFVELEDAAGQWRVENKWVTSPGNAVDL 159
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.137 0.417
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,286,341
Number of extensions: 402252
Number of successful extensions: 1019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 31
Length of query: 581
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 482
Effective length of database: 4,124,446
Effective search space: 1987982972
Effective search space used: 1987982972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)