RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62] (581 letters) >d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Score = 27.9 bits (62), Expect = 2.1 Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 237 IEKSSISNFHESNSWLGISDKYWASVFIPSKETSFH 272 + S +F E + S K+ + +P ++SF+ Sbjct: 41 FQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFY 76 >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Score = 27.0 bits (59), Expect = 3.8 Identities = 3/26 (11%), Positives = 16/26 (61%) Query: 380 KKQYVSTANMKNIQPKIDELREKFKQ 405 + + + + + + ++DE R+++++ Sbjct: 222 EFKSIDEVDFEKLSRELDESRDRYRR 247 >d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 876 Score = 26.5 bits (58), Expect = 6.2 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 14/85 (16%) Query: 499 LSMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFP----AGLIIYWSWSNVISIVQQA 554 + ++ MK + + + V +F S P A LII + V IV Sbjct: 620 IYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKL-INCVADIVNND 678 Query: 555 VIMKMHGAEIGLIDRLRSTFSKNYN 579 ++ L+ F +YN Sbjct: 679 ESIE---------HLLKVVFVADYN 694 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.137 0.417 Gapped Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,206,635 Number of extensions: 104065 Number of successful extensions: 239 Number of sequences better than 10.0: 1 Number of HSP's gapped: 239 Number of HSP's successfully gapped: 13 Length of query: 581 Length of database: 2,407,596 Length adjustment: 90 Effective length of query: 491 Effective length of database: 1,171,896 Effective search space: 575400936 Effective search space used: 575400936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.7 bits)