BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780483|ref|YP_003064896.1| putative inner membrane
protein translocase component YidC [Candidatus Liberibacter asiaticus
str. psy62]
         (581 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 581

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/581 (100%), Positives = 581/581 (100%)

Query: 1   MERNWNYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLIDD 60
           MERNWNYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLIDD
Sbjct: 1   MERNWNYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLIDD 60

Query: 61  RAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAY 120
           RAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAY
Sbjct: 61  RAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAY 120

Query: 121 FAELDYVSTANNIELPNSNTVWNLISGKILTPTTPIKLVFKNANNILFERTISLDEHYLF 180
           FAELDYVSTANNIELPNSNTVWNLISGKILTPTTPIKLVFKNANNILFERTISLDEHYLF
Sbjct: 121 FAELDYVSTANNIELPNSNTVWNLISGKILTPTTPIKLVFKNANNILFERTISLDEHYLF 180

Query: 181 KIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKS 240
           KIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKS
Sbjct: 181 KIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKS 240

Query: 241 SISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPGK 300
           SISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPGK
Sbjct: 241 SISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPGK 300

Query: 301 SITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGNF 360
           SITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGNF
Sbjct: 301 SITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGNF 360

Query: 361 GIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420
           GIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYK
Sbjct: 361 GIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420

Query: 421 THNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGIL 480
           THNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGIL
Sbjct: 421 THNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGIL 480

Query: 481 PFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFPAGLII 540
           PFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFPAGLII
Sbjct: 481 PFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFPAGLII 540

Query: 541 YWSWSNVISIVQQAVIMKMHGAEIGLIDRLRSTFSKNYNSQ 581
           YWSWSNVISIVQQAVIMKMHGAEIGLIDRLRSTFSKNYNSQ
Sbjct: 541 YWSWSNVISIVQQAVIMKMHGAEIGLIDRLRSTFSKNYNSQ 581


>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 160

 Score = 29.6 bits (65), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 207 PQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPS 266
           P T  N   +QE F + +GD    +     I  + I       SWL   +K+     I  
Sbjct: 31  PDTVLNESSLQEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWL---EKHDCDFLIEG 87

Query: 267 KETSFHSQFKYLSDGHARYQAKFSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKD 324
                 S+   ++ G  R  A F+      +    +  T++     KE P+++ +++D
Sbjct: 88  HADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSY----GKEMPSVYGHDED 141


>gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 191

 Score = 26.2 bits (56), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 180 FKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEK 239
           F+I+  ++++S ++IR   +  + +H P       G +E F AV+       Q Y  ++K
Sbjct: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVI-------QAYKILKK 187

Query: 240 S 240
           S
Sbjct: 188 S 188


>gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 236

 Score = 25.4 bits (54), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 183 VDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLG-----DKSLVEQKYSDI 237
           V   T+  I +I  SPRG+ +    Q        + G I V G     D+ ++E +  D+
Sbjct: 77  VSQYTHEDIPRILMSPRGKTL---TQKRVRQLSQKLGVIIVCGRFEGIDERIIEAR--DL 131

Query: 238 EKSSISNF 245
           E+ S+ ++
Sbjct: 132 EEISVGDY 139


>gi|254780208|ref|YP_003064621.1| hypothetical protein CLIBASIA_00465 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 66

 Score = 23.9 bits (50), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 12/46 (26%)

Query: 346 MFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKN 391
           M  +M  F + +GNF            L+FFP+ + +++S   +KN
Sbjct: 7   MIRIMHLFLDQIGNF------------LMFFPMLRNRHMSIKILKN 40


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,704
Number of Sequences: 1233
Number of extensions: 15369
Number of successful extensions: 48
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 10
length of query: 581
length of database: 328,796
effective HSP length: 79
effective length of query: 502
effective length of database: 231,389
effective search space: 116157278
effective search space used: 116157278
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 41 (20.4 bits)