HHsearch alignment for GI: 254780484 and conserved domain: CHL00071
>CHL00071 tufA elongation factor Tu.
Probab=99.54 E-value=2.1e-13 Score=96.23 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=100.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCE-----EE---ECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHH
Q ss_conf 8999748998898999997389737-----98---738884145212026655567850896499997600101112244
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNL-----AR---TSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKK 102 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~-----a~---~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~ 102 (212)
T Consensus 14 ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PGH~~fv~n-- 91 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKN-- 91 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCCHHHHHHH--
T ss_conf 999995458839999999864530045133431553237976873694488024899628759999867967899999--
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHH-HHHHHHHH
Q ss_conf 78988889987777664200000112235788754545543210257532212-22211110246899999-99999753
Q gi|254780484|r 103 NVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIV-LTKIDKLSPTTAQETLE-KTKYLIRN 180 (212)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~nK~D~~~~~~~~~~~~-~~~~~~~~ 180 (212)
T Consensus 92 -----------mi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~ 160 (409)
T CHL00071 92 -----------MITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDK 160 (409)
T ss_pred -----------HHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -----------875230158128999868788500499999999739993655555679854899999999999999997
Q ss_pred CCC--CCCCEEEEECCCC
Q ss_conf 136--8986899988888
Q gi|254780484|r 181 YPT--AHPEVIPTSSVKR 196 (212)
Q Consensus 181 ~~~--~~~~i~~vSA~~g 196 (212)
T Consensus 161 ~g~~~~~i~~vp~sa~~~ 178 (409)
T CHL00071 161 YDFPGDEIPIVAGSALLA 178 (409)
T ss_pred CCCCCCCCEEEECCHHHH
T ss_conf 399845560896521332