HHsearch alignment for GI: 254780484 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=98.89 E-value=2.9e-08 Score=66.68 Aligned_cols=122 Identities=15% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH--CCC-CE-----EEECCCCCEE------EECCEEEEEEEEEEEECCCEEEEEECCH
Q ss_conf 68689997489988989999973--897-37-----9873888414------5212026655567850896499997600
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILV--NRK-NL-----ARTSNAPGRT------QHLNFFVPKDFSNLKNNLPAMALVDMPG 93 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~--g~~-~~-----a~~~~~p~tt------~~~~~~~~~~~~~~~~~~~~~~~~DtpG 93 (212)
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred HHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC
T ss_conf 43403688568888511889999723034305501222577634227788887568558765787603884886147998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 101112244789888899877776642000001122357887545455432102575322122221111
Q gi|254780484|r 94 YGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKL 162 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 162 (212)
T Consensus 91 HeDFSEDTY-------------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTY-------------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE 146 (528)
T ss_pred CCCCCHHHH-------------HHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 654323678-------------99986410468986035866889999999850598469975023656