HHsearch alignment for GI: 254780484 and conserved domain: COG5192
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis].
Probab=98.35 E-value=4.9e-06 Score=53.82 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=90.0
Q ss_pred CHHHCCCCCCCE--EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHH
Q ss_conf 567588766868--999748998898999997389737987388841452120266555678508964999976001011
Q gi|254780484|r 20 EIGLLPKAGPPE--IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYA 97 (212)
Q Consensus 20 ~~~~~P~~~~p~--VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~ 97 (212)
T Consensus 58 mvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk-~ti~~i---~GP-------iTvvsgK~RRiTflEcp~D--- 123 (1077)
T COG5192 58 MVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTK-QTIDEI---RGP-------ITVVSGKTRRITFLECPSD--- 123 (1077)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHHCC---CCC-------EEEEECCEEEEEEEECHHH---
T ss_conf 22578555899758996369988746899999999877-542036---786-------4786156357898867178---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf 122447898888998777766420000011223578875454554321025753-2212222111102-46899999999
Q gi|254780484|r 98 RAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVS-YQIVLTKIDKLSP-TTAQETLEKTK 175 (212)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~~~-~~~~~~~~~~~ 175 (212)
T Consensus 124 -------------l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlk 190 (1077)
T COG5192 124 -------------LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLK 190 (1077)
T ss_pred -------------HHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf -------------8888768875213578863666704248899999866489724788862113358378999998876
Q ss_pred HHHHHCCCCCCCEEEEECCC
Q ss_conf 99753136898689998888
Q gi|254780484|r 176 YLIRNYPTAHPEVIPTSSVK 195 (212)
Q Consensus 176 ~~~~~~~~~~~~i~~vSA~~ 195 (212)
T Consensus 191 hRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 191 HRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 66799873774489860201