HHsearch alignment for GI: 254780484 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=99.95 E-value=1.8e-27 Score=177.10 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=115.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 68689997489988989999973897379873888414521202665556785089649999760010111224478988
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSW 107 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 107 (212)
T Consensus 215 ~G~~v~i~G~PN~GKSSL~N~L~~~d-rAIVS~ipGTTRD~------ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ 287 (445)
T PRK05291 215 EGLKVVIAGRPNVGKSSLLNALLGEE-RAIVTDIAGTTRDV------IEEHINLDGIPLRLIDTAGIRETEDEVEKIGIE 287 (445)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCE------EEEEEEECCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 59869988999876899999985787-46731899974040------223689999899999899766557458899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88998777766420000011223578875454554321025753221222211110246899999999997531368986
Q gi|254780484|r 108 GGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPE 187 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (212)
T Consensus 288 r-----a~~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~-----------------~~~~ 343 (445)
T PRK05291 288 R-----SRKAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKI-----------------DGLP 343 (445)
T ss_pred H-----HHHHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCC-----------------CCCC
T ss_conf 9-----99999839999999879988872259999851--7998799985120466534-----------------7897
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 899988888998999999998728
Q gi|254780484|r 188 VIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 188 i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 344 ~i~iSak~g~Gi~~L~~~i~~~~~ 367 (445)
T PRK05291 344 VIRISAKTGEGIDELEEALKQLVG 367 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 599983788699999999999970