HHsearch alignment for GI: 254780484 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.30  E-value=0.00056  Score=41.98  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=56.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHH-------CCCCEEEECCCCCEEEEC----CEEE-EEEEEE------------EEECCCE
Q ss_conf             689997489988989999973-------897379873888414521----2026-655567------------8508964
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILV-------NRKNLARTSNAPGRTQHL----NFFV-PKDFSN------------LKNNLPA   85 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~-------g~~~~a~~~~~p~tt~~~----~~~~-~~~~~~------------~~~~~~~   85 (212)
T Consensus       211 ~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~d  290 (412)
T PRK05703        211 GVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCD  290 (412)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf             36999888887567699999999999729981799983767777999999999971973798479999999998715899


Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf             9999760010111224478988889987777664200000112235788754545-543210257532212222111102
Q gi|254780484|r   86 MALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQD-VFSFLDKKAVSYQIVLTKIDKLSP  164 (212)
Q Consensus        86 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~nK~D~~~~  164 (212)
T Consensus       291 lILIDTaG~s~~d~--~~~~eL~~~~~----~~~-~~~~~LVlsat--~~~~dl~~i~~~f~~-~~~~~lI~TKlDEt~~  360 (412)
T PRK05703        291 LILIDTAGRSQRDP--RLISELKALIE----NSK-PIDVYLVLSAT--TKYRDLKDIVKHFSR-LPLDGLILTKLDETSS  360 (412)
T ss_pred             EEEEECCCCCCCCH--HHHHHHHHHHH----HCC-CCCEEEEECCC--CCHHHHHHHHHHHCC-CCCCEEEEEEECCCCC
T ss_conf             79996898897899--99999999986----248-87189997598--998999999998467-9998799971128998


Q ss_pred             H
Q ss_conf             4
Q gi|254780484|r  165 T  165 (212)
Q Consensus       165 ~  165 (212)
T Consensus       361 ~  361 (412)
T PRK05703        361 L  361 (412)
T ss_pred             C
T ss_conf             6