HHsearch alignment for GI: 254780484 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.30 E-value=0.00056 Score=41.98 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=56.5
Q ss_pred CEEEEECCCCCCHHHHHHHHH-------CCCCEEEECCCCCEEEEC----CEEE-EEEEEE------------EEECCCE
Q ss_conf 689997489988989999973-------897379873888414521----2026-655567------------8508964
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILV-------NRKNLARTSNAPGRTQHL----NFFV-PKDFSN------------LKNNLPA 85 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~-------g~~~~a~~~~~p~tt~~~----~~~~-~~~~~~------------~~~~~~~ 85 (212)
T Consensus 211 ~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~d 290 (412)
T PRK05703 211 GVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCD 290 (412)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 36999888887567699999999999729981799983767777999999999971973798479999999998715899
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 9999760010111224478988889987777664200000112235788754545-543210257532212222111102
Q gi|254780484|r 86 MALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQD-VFSFLDKKAVSYQIVLTKIDKLSP 164 (212)
Q Consensus 86 ~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~nK~D~~~~ 164 (212)
T Consensus 291 lILIDTaG~s~~d~--~~~~eL~~~~~----~~~-~~~~~LVlsat--~~~~dl~~i~~~f~~-~~~~~lI~TKlDEt~~ 360 (412)
T PRK05703 291 LILIDTAGRSQRDP--RLISELKALIE----NSK-PIDVYLVLSAT--TKYRDLKDIVKHFSR-LPLDGLILTKLDETSS 360 (412)
T ss_pred EEEEECCCCCCCCH--HHHHHHHHHHH----HCC-CCCEEEEECCC--CCHHHHHHHHHHHCC-CCCCEEEEEEECCCCC
T ss_conf 79996898897899--99999999986----248-87189997598--998999999998467-9998799971128998
Q ss_pred H
Q ss_conf 4
Q gi|254780484|r 165 T 165 (212)
Q Consensus 165 ~ 165 (212)
T Consensus 361 ~ 361 (412)
T PRK05703 361 L 361 (412)
T ss_pred C
T ss_conf 6