HHsearch alignment for GI: 254780484 and conserved domain: PRK10512
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional.
Probab=99.80 E-value=1.7e-18 Score=125.52 Aligned_cols=161 Identities=20% Similarity=0.363 Sum_probs=125.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897--3798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRK--NLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~--~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 2 IigTAGHVDHGKTsLvkALTG~dtDRL~E-Ek~RGiTIdLGFA~~~-----l~~g~~~g~VDVPGHErF----------- 64 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPE-EKKRGMTIDLGYAYWP-----QPDGRVLGFIDVPGHEKF----------- 64 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHH-HHHHCCEEEECEEEEE-----CCCCCEEEEEECCCHHHH-----------
T ss_conf 89963654778999999986888656977-8971872771307555-----799978999879983899-----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8998777766420000011223578875454554321025753-221222211110246899999999997531368986
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVS-YQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPE 187 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (212)
T Consensus 65 --IknMlAG~~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l~~~p 142 (615)
T PRK10512 65 --LSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGFAEAK 142 (615)
T ss_pred --HHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --999974464378899999889987723799999999819982899997765689799999999999998447876797
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 89998888899899999999872
Q gi|254780484|r 188 VIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 188 i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 143 i~~vSa~tg~Gi~~L~~~L~~l~ 165 (615)
T PRK10512 143 LFVTAATEGRGIDALREHLLQLP 165 (615)
T ss_pred EEECCCCCCCCHHHHHHHHHHHC
T ss_conf 52014566679999999998625