HHsearch alignment for GI: 254780484 and conserved domain: TIGR00092
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=99.25 E-value=3.1e-12 Score=89.45 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=57.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEE------------CCCEEEEEECCHHHHH
Q ss_conf 6899974899889899999738973798738884145212026655567850------------8964999976001011
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKN------------NLPAMALVDMPGYGYA 97 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~------------~~~~~~~~DtpG~~~~ 97 (212)
T Consensus 3 l~aGIVGLpNVGKSTlF~AiT~~~-~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvkG 81 (390)
T TIGR00092 3 LKAGIVGLPNVGKSTLFNAITNLQ-LGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVKG 81 (390)
T ss_pred CCCCCEECCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCCC
T ss_conf 876530068760557999998266-7776688876516764446258853334776406420411404899862234100
Q ss_pred HHHHHHHHH
Q ss_conf 122447898
Q gi|254780484|r 98 RAPKKNVDS 106 (212)
Q Consensus 98 ~~~~~~~~~ 106 (212)
T Consensus 82 AS~GeGLGN 90 (390)
T TIGR00092 82 ASKGEGLGN 90 (390)
T ss_pred CCCCCCCHH
T ss_conf 015787233