HHsearch alignment for GI: 254780484 and conserved domain: TIGR00231

>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.05  E-value=1.6e-09  Score=73.89  Aligned_cols=171  Identities=24%  Similarity=0.245  Sum_probs=106.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC--CEEEECCEEEEEEEEEE------EECCCEEEEEECCHHHHHHHH
Q ss_conf             8689997489988989999973897379873888--41452120266555678------508964999976001011122
Q gi|254780484|r   29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAP--GRTQHLNFFVPKDFSNL------KNNLPAMALVDMPGYGYARAP  100 (212)
Q Consensus        29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p--~tt~~~~~~~~~~~~~~------~~~~~~~~~~DtpG~~~~~~~  100 (212)
T Consensus         3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w-~~~~~~~d~~G~~~~~~~   80 (186)
T TIGR00231         3 DIKIGIVGDPNVGKSTLLNRLLGNKG-SITESGPTDGTTRDYVTESIEEDGKTITGATFQW-GYKFNLLDTPGLHRQEDY   80 (186)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHCCC-CEEECCCCCCCCHHHHEEEEEECCEEEEEEEEEC-CEEEEEEECCCCHHHHHH
T ss_conf             50589973477660455544541012-0010232333200000011345580234343102-427898625771135555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHH
Q ss_conf             44789888899877776642000001122357887545455432102575322122221111024--6899999999997
Q gi|254780484|r  101 KKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPT--TAQETLEKTKYLI  178 (212)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~--~~~~~~~~~~~~~  178 (212)
T Consensus        81 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  157 (186)
T TIGR00231        81 DALRR---LYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLF  157 (186)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHH
T ss_conf             44543---322344544433333332221110010256778753221274169985133655467540100003455555


Q ss_pred             HHCCCCCCC-EEEEECCCCCCHHHHHHHH
Q ss_conf             531368986-8999888889989999999
Q gi|254780484|r  179 RNYPTAHPE-VIPTSSVKRKGIEVLRKAI  206 (212)
Q Consensus       179 ~~~~~~~~~-i~~vSA~~g~Gi~eL~~~I  206 (212)
T Consensus       158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (186)
T TIGR00231       158 --AKLNGEPHFIPLSAETGKGIDSLFGLV  184 (186)
T ss_pred             --HHHCCCCCEEECCHHHHCCHHHHHHHH
T ss_conf             --542366401111001110045566654