HHsearch alignment for GI: 254780484 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.05 E-value=1.6e-09 Score=73.89 Aligned_cols=171 Identities=24% Similarity=0.245 Sum_probs=106.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC--CEEEECCEEEEEEEEEE------EECCCEEEEEECCHHHHHHHH
Q ss_conf 8689997489988989999973897379873888--41452120266555678------508964999976001011122
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAP--GRTQHLNFFVPKDFSNL------KNNLPAMALVDMPGYGYARAP 100 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p--~tt~~~~~~~~~~~~~~------~~~~~~~~~~DtpG~~~~~~~ 100 (212)
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w-~~~~~~~d~~G~~~~~~~ 80 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKG-SITESGPTDGTTRDYVTESIEEDGKTITGATFQW-GYKFNLLDTPGLHRQEDY 80 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCC-CEEECCCCCCCCHHHHEEEEEECCEEEEEEEEEC-CEEEEEEECCCCHHHHHH
T ss_conf 50589973477660455544541012-0010232333200000011345580234343102-427898625771135555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHH
Q ss_conf 44789888899877776642000001122357887545455432102575322122221111024--6899999999997
Q gi|254780484|r 101 KKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPT--TAQETLEKTKYLI 178 (212)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~--~~~~~~~~~~~~~ 178 (212)
T Consensus 81 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 157 (186)
T TIGR00231 81 DALRR---LYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLF 157 (186)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 44543---322344544433333332221110010256778753221274169985133655467540100003455555
Q ss_pred HHCCCCCCC-EEEEECCCCCCHHHHHHHH
Q ss_conf 531368986-8999888889989999999
Q gi|254780484|r 179 RNYPTAHPE-VIPTSSVKRKGIEVLRKAI 206 (212)
Q Consensus 179 ~~~~~~~~~-i~~vSA~~g~Gi~eL~~~I 206 (212)
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 158 --AKLNGEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred --HHHCCCCCEEECCHHHHCCHHHHHHHH
T ss_conf --542366401111001110045566654