HHsearch alignment for GI: 254780484 and conserved domain: TIGR00475
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=99.82 E-value=2.7e-19 Score=130.03 Aligned_cols=167 Identities=21% Similarity=0.355 Sum_probs=140.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECC--CEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089--6499997600101112244789888
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNL--PAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 2 ~~at~GHvDHGKT~L~k~LTgi~s-tsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPGHe------------- 67 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIDS-TSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPGHE------------- 67 (627)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCC-HHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCCHH-------------
T ss_conf 687312445047999998506430-123127741025766246042003677777133478559738-------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 8998777766420000011223578875454554321025753-221222211110246899999999997531368-98
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVS-YQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTA-HP 186 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 186 (212)
T Consensus 68 ~fl~n~lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~ 147 (627)
T TIGR00475 68 KFLSNALAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNA 147 (627)
T ss_pred HHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999866756540100354157788532389999999708961999973467456589999999999998764321157
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6899988888998999999998728
Q gi|254780484|r 187 EVIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 187 ~i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 148 ~~~~~SA~tG~Gi~~Lk~~L~~L~e 172 (627)
T TIGR00475 148 KIFKTSAKTGQGIEELKKELKNLLE 172 (627)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4799913468777899999986577