HHsearch alignment for GI: 254780484 and conserved domain: TIGR01394
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=99.51 E-value=2.4e-14 Score=101.56 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=122.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-EEEE-C--------CCCCEEEECCEEEEEEEEEEEECC----CEEEEEECCHHHH
Q ss_conf 899974899889899999738973-7987-3--------888414521202665556785089----6499997600101
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKN-LART-S--------NAPGRTQHLNFFVPKDFSNLKNNL----PAMALVDMPGYGY 96 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~-~a~~-~--------~~p~tt~~~~~~~~~~~~~~~~~~----~~~~~~DtpG~~~ 96 (212)
T Consensus 3 NIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPGHAD 82 (609)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPGHAD 82 (609)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 18999880699436898888876588641588321354067652100155201300366252889718997781689887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11224478988889987777664200000112235788754545543210257532212222111102468999999999
Q gi|254780484|r 97 ARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKY 176 (212)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~ 176 (212)
T Consensus 83 FGGEVERvL-------------~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~-ARP~eV~d~vFD 148 (609)
T TIGR01394 83 FGGEVERVL-------------GMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-ARPDEVVDEVFD 148 (609)
T ss_pred CCCEEEEEC-------------EEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH
T ss_conf 886588733-------------024058999857888988534789999956893699971347887-883788757878
Q ss_pred HHHHCCCC----CCCEEEEECCCCC---------------CHHHHHHHHHHHH
Q ss_conf 97531368----9868999888889---------------9899999999872
Q gi|254780484|r 177 LIRNYPTA----HPEVIPTSSVKRK---------------GIEVLRKAILETI 210 (212)
Q Consensus 177 ~~~~~~~~----~~~i~~vSA~~g~---------------Gi~eL~~~I~~~l 210 (212)
T Consensus 149 LF~~LgA~deQLDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hv 201 (609)
T TIGR01394 149 LFIELGADDEQLDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHV 201 (609)
T ss_pred HHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 88853888001012567665236720144665778872201789998986406