HHsearch alignment for GI: 254780484 and conserved domain: TIGR03596
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.02 E-value=4e-05 Score=48.59 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 66420000011223578875454554321025753221222211110246899999999997531368986899988888
Q gi|254780484|r 117 ERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKR 196 (212)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 196 (212)
T Consensus 18 ~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~~~~~~~~w~~~~~~-------~~~~~~~~sa~~~ 88 (276)
T TIGR03596 18 KLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEQ-------KGIKALAINAKKG 88 (276)
T ss_pred HHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHHH-------CCCCEEEEHHCCC
T ss_conf 98759999999867788786897599986--69967999734345999999999999984-------3991898643074
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999872
Q gi|254780484|r 197 KGIEVLRKAILETI 210 (212)
Q Consensus 197 ~Gi~eL~~~I~~~l 210 (212)
T Consensus 89 ~~~~~l~~~~~~~~ 102 (276)
T TIGR03596 89 KGVKKIIKAAKKLL 102 (276)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 53899999999999