HHsearch alignment for GI: 254780484 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.96 E-value=2.2e-28 Score=182.35 Aligned_cols=163 Identities=26% Similarity=0.354 Sum_probs=123.3
Q ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97489988989999973897379873888414521202665556785089649999760010111224478988889987
Q gi|254780484|r 34 FSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVR 113 (212)
Q Consensus 34 ivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 113 (212)
T Consensus 1 ivG~~N~GKStL~N~L~~~~-~~~vs~~~gtT~~~~~~~~~-----~~~~~~i~lvDtpG~~~~~~~~~~~------~~~ 68 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE-VAIVSPVPGTTTDPVEYVWE-----LGPLGPVVLIDTPGIDEAGGLGRER------EEL 68 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CCEECCCCCEECCCEEEEEE-----ECCCCEEEEEECCCCCCCCCHHHHH------HHH
T ss_conf 91979989999999995899-61016989986564589999-----5478659997279852223101689------999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 77766420000011223578875454554321025753221222211110246899999999997531368986899988
Q gi|254780484|r 114 YLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSS 193 (212)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA 193 (212)
T Consensus 69 ~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~~i~~iSA 146 (163)
T cd00880 69 ARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILL--LLLGLPVIAVSA 146 (163)
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHH--HCCCCEEEEEEC
T ss_conf 999998689899998789997556699999999719742788534206787899999999999987--679985999978
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 88899899999999872
Q gi|254780484|r 194 VKRKGIEVLRKAILETI 210 (212)
Q Consensus 194 ~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 147 ~~g~gi~~L~~~i~e~L 163 (163)
T cd00880 147 LTGEGIDELREALIEAL 163 (163)
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 98979999999999519