HHsearch alignment for GI: 254780484 and conserved domain: cd00880

>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.96  E-value=2.2e-28  Score=182.35  Aligned_cols=163  Identities=26%  Similarity=0.354  Sum_probs=123.3

Q ss_pred             EECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97489988989999973897379873888414521202665556785089649999760010111224478988889987
Q gi|254780484|r   34 FSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVR  113 (212)
Q Consensus        34 ivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~  113 (212)
T Consensus         1 ivG~~N~GKStL~N~L~~~~-~~~vs~~~gtT~~~~~~~~~-----~~~~~~i~lvDtpG~~~~~~~~~~~------~~~   68 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQE-VAIVSPVPGTTTDPVEYVWE-----LGPLGPVVLIDTPGIDEAGGLGRER------EEL   68 (163)
T ss_pred             CCCCCCCCHHHHHHHHHCCC-CCEECCCCCEECCCEEEEEE-----ECCCCEEEEEECCCCCCCCCHHHHH------HHH
T ss_conf             91979989999999995899-61016989986564589999-----5478659997279852223101689------999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             77766420000011223578875454554321025753221222211110246899999999997531368986899988
Q gi|254780484|r  114 YLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSS  193 (212)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA  193 (212)
T Consensus        69 ~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~~i~~iSA  146 (163)
T cd00880          69 ARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILL--LLLGLPVIAVSA  146 (163)
T ss_pred             HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHH--HCCCCEEEEEEC
T ss_conf             999998689899998789997556699999999719742788534206787899999999999987--679985999978


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             88899899999999872
Q gi|254780484|r  194 VKRKGIEVLRKAILETI  210 (212)
Q Consensus       194 ~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       147 ~~g~gi~~L~~~i~e~L  163 (163)
T cd00880         147 LTGEGIDELREALIEAL  163 (163)
T ss_pred             CCCCCHHHHHHHHHHHC
T ss_conf             98979999999999519