HHsearch alignment for GI: 254780484 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=5.9e-24 Score=156.85 Aligned_cols=165 Identities=17% Similarity=0.267 Sum_probs=123.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCE---------EEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHH
Q ss_conf 999748998898999997389737987388841---------45212026655567850896499997600101112244
Q gi|254780484|r 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGR---------TQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKK 102 (212)
Q Consensus 32 VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~t---------t~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~ 102 (212)
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~-~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~--- 77 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGD-IERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSS--- 77 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC-CCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHH---
T ss_conf 899917998999999999976472-3568625888505777888638413222799998998999996998188999---
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-
Q ss_conf 7898888998777766420000011223578875454554321025753221222211110246899999999997531-
Q gi|254780484|r 103 NVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY- 181 (212)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~- 181 (212)
T Consensus 78 ----------~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~ 147 (189)
T cd00881 78 ----------EVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred ----------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf ----------9999986468569999879899878999999999769987999989718775629999999999987532
Q ss_pred ----------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ----------36898689998888899899999999872
Q gi|254780484|r 182 ----------PTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 182 ----------~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 148 ~~~~~~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~l 186 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 102321101258877599988867869799999999768