HHsearch alignment for GI: 254780484 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.54 E-value=1.5e-14 Score=102.84 Aligned_cols=57 Identities=37% Similarity=0.527 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHH
Q ss_conf 6868999748998898999997389737987388841452120266555678508964999976001
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGY 94 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~ 94 (212)
T Consensus 114 ~~~~v~ivG~PNVGKSSlIN~L~~~~~-~~v~~~pGtTr~~~~---------i~~~~~~~liDTPGI 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV-AKVGNKPGVTKGIQW---------IKISPGIYLLDTPGI 170 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCCCCEEE---------EEECCCEEEEECCCC
T ss_conf 771799973798761799999748863-887698985326679---------996899999979988