HHsearch alignment for GI: 254780484 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.57 E-value=5.7e-15 Score=105.18 Aligned_cols=58 Identities=33% Similarity=0.561 Sum_probs=45.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHH
Q ss_conf 66868999748998898999997389737987388841452120266555678508964999976001
Q gi|254780484|r 27 AGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGY 94 (212)
Q Consensus 27 ~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~ 94 (212)
T Consensus 100 ~~~i~v~ivG~PNVGKSSlIN~L~g~k-~~~vs~~PG~Tr~~q~---------i~~~~~i~liDTPGi 157 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQY---------ITLMKRIYLIDCPGV 157 (157)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCC-EEEECCCCCEEEEEEE---------EEECCCEEEEECCCC
T ss_conf 564699998258853368898872673-5886598833777799---------996899999969099