HHsearch alignment for GI: 254780484 and conserved domain: cd01859
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.38 E-value=1.4e-06 Score=56.92 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=69.1
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 66420000011223578875454554321025753221222211110246899999999997531368986899988888
Q gi|254780484|r 117 ERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKR 196 (212)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 196 (212)
T Consensus 9 ~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~----~~~~~~---~~~g~~~i~iSa~~~ 81 (156)
T cd01859 9 IIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLE----KWKSIK---ESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHH----HHHHHH---HCCCCCEEEEECCCC
T ss_conf 9987999999998788999869899999975699399997755558989999----999998---289997378701267
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999872
Q gi|254780484|r 197 KGIEVLRKAILETI 210 (212)
Q Consensus 197 ~Gi~eL~~~I~~~l 210 (212)
T Consensus 82 ~g~~~L~~~i~~~~ 95 (156)
T cd01859 82 LGTKILRRTIKELA 95 (156)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 57999999999860