HHsearch alignment for GI: 254780484 and conserved domain: cd01859

>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.38  E-value=1.4e-06  Score=56.92  Aligned_cols=87  Identities=21%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             66420000011223578875454554321025753221222211110246899999999997531368986899988888
Q gi|254780484|r  117 ERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKR  196 (212)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g  196 (212)
T Consensus         9 ~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~----~~~~~~---~~~g~~~i~iSa~~~   81 (156)
T cd01859           9 IIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLE----KWKSIK---ESEGIPVVYVSAKER   81 (156)
T ss_pred             HHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHH----HHHHHH---HCCCCCEEEEECCCC
T ss_conf             9987999999998788999869899999975699399997755558989999----999998---289997378701267


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99899999999872
Q gi|254780484|r  197 KGIEVLRKAILETI  210 (212)
Q Consensus       197 ~Gi~eL~~~I~~~l  210 (212)
T Consensus        82 ~g~~~L~~~i~~~~   95 (156)
T cd01859          82 LGTKILRRTIKELA   95 (156)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             57999999999860