HHsearch alignment for GI: 254780484 and conserved domain: cd01862
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.53 E-value=3.3e-14 Score=100.79 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=85.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f~~--~y~~Tig~d----~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~------- 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGAD----FLTKEVTVDDKLVTLQIWDTAGQERFQSLGV------- 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCEE----EEEEEEEECCEEEEEEEEECCCCHHHHHHHH-------
T ss_conf 989999989978999999995298898--757755516----9999999999999999996999831106889-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC--HH---HHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99877776642000001122357887--54---545543---21025753221222211110246899999999997531
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVK--QI---DQDVFS---FLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY 181 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~---~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~ 181 (212)
T Consensus 68 ---~~~---~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V~~--~e~~~~a~~- 138 (172)
T cd01862 68 ---AFY---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST--KKAQQWCQS- 138 (172)
T ss_pred ---HHH---HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCH--HHHHHHHHH-
T ss_conf ---986---52757999933899899999999999999972767765763899963368364189999--999999997-
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 36898689998888899899999999872
Q gi|254780484|r 182 PTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 182 ~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 139 -~~~~~~~E~SAk~~~nV~e~F~~l~~~~ 166 (172)
T cd01862 139 -NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -CCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -6997899975267919899999999999