HHsearch alignment for GI: 254780484 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.55 E-value=3e-14 Score=101.09 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=86.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 4 ~KivlvGd~~vGKTsli~r~~~~~f~--~~~~~Tig~~~----~~k~v~~~~~~i~l~iwDt~G~e~~~~~~~------- 70 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFN--PSFISTIGIDF----KIRTIELDGKKIKLQIWDTAGQERFRTITT------- 70 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEE----EEEEEEECCEEEEEEEEECCCCCCHHHHHH-------
T ss_conf 99999999997889999999609999--98689864688----999999999999999998999700116679-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH--HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9987777664200000112235788--75454--5543210257532212222111102468999999999975313689
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQ--DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 71 ---~y~---~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~--~~e~~~~a~~~---~ 139 (167)
T cd01867 71 ---AYY---RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGEALADEY---G 139 (167)
T ss_pred ---HHH---HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCC--HHHHHHHHHHH---C
T ss_conf ---985---650588995568987999999999999998669997057642124502307799--99999999980---9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8689998888899899999999872
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 140 ~~~~e~SAktg~nI~e~F~~l~~~i 164 (167)
T cd01867 140 IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9699982257907899999999999