HHsearch alignment for GI: 254780484 and conserved domain: cd01867

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.55  E-value=3e-14  Score=101.09  Aligned_cols=157  Identities=17%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         4 ~KivlvGd~~vGKTsli~r~~~~~f~--~~~~~Tig~~~----~~k~v~~~~~~i~l~iwDt~G~e~~~~~~~-------   70 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFN--PSFISTIGIDF----KIRTIELDGKKIKLQIWDTAGQERFRTITT-------   70 (167)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEE----EEEEEEECCEEEEEEEEECCCCCCHHHHHH-------
T ss_conf             99999999997889999999609999--98689864688----999999999999999998999700116679-------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH--HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9987777664200000112235788--75454--5543210257532212222111102468999999999975313689
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQ--DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH  185 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  185 (212)
T Consensus        71 ---~y~---~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~--~~e~~~~a~~~---~  139 (167)
T cd01867          71 ---AYY---RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGEALADEY---G  139 (167)
T ss_pred             ---HHH---HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCC--HHHHHHHHHHH---C
T ss_conf             ---985---650588995568987999999999999998669997057642124502307799--99999999980---9


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8689998888899899999999872
Q gi|254780484|r  186 PEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       186 ~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       140 ~~~~e~SAktg~nI~e~F~~l~~~i  164 (167)
T cd01867         140 IKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             9699982257907899999999999