HHsearch alignment for GI: 254780484 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.58 E-value=1.5e-14 Score=102.77 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=85.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 3 ~~Kiv~iGd~~VGKTsli~r~~~~~f~~--~~~~Tig~~~----~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~----- 71 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--DSKSTIGVEF----ATRSIQIDGKTIKAQIWDTAGQERYRAITSA----- 71 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEE----EEEEEEECCEEEEEEEEECCCCHHHHHHHHH-----
T ss_conf 5899999999978999999997298999--8898744787----8999999999999999989997212678998-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH--HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89987777664200000112235788--75454--554321025753221222211110246899999999997531368
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQIDQ--DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTA 184 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 184 (212)
T Consensus 72 -----~~---~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs--~~e~~~~a~~~--- 138 (165)
T cd01868 72 -----YY---RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAEKN--- 138 (165)
T ss_pred -----HH---HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCC--HHHHHHHHHHC---
T ss_conf -----73---320514898626988999999999999998555773598702347868857888--99999999985---
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 98689998888899899999999872
Q gi|254780484|r 185 HPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 139 ~~~~~E~SAk~g~nV~e~F~~l~~~i 164 (165)
T cd01868 139 GLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99799967888929899999999986