HHsearch alignment for GI: 254780484 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.51 E-value=2.1e-13 Score=96.18 Aligned_cols=160 Identities=11% Similarity=0.097 Sum_probs=85.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~~f~--~~~~~-Ti~~~----~~~~i~~~~~~v~l~iwDtaGqe~~~~~~~~------ 68 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP-TVFDN----YSANVMVDGKPVNLGLWDTAGQEDYDRLRPL------ 68 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCC-EEEEE----EEEEEEECCEEEEEEEECCCCCCCCHHHHHH------
T ss_conf 69999899998699999999739999--98688-37887----6799999999999999869997240678899------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----H----HH
Q ss_conf 998777766420000011223578--87545455432--10257532212222111102468999999-----9----99
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSF--LDKKAVSYQIVLTKIDKLSPTTAQETLEK-----T----KY 176 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~v~nK~D~~~~~~~~~~~~~-----~----~~ 176 (212)
T Consensus 69 ----~~~~a---~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~ 141 (174)
T cd01871 69 ----SYPQT---DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred ----HHHHC---CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf ----87406---68999986798788999999999999985889997987473013100456778865146775899999
Q ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9753136898689998888899899999999872
Q gi|254780484|r 177 LIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 177 ~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 142 ~~a~-~~~~~~f~EtSAk~~~nV~e~F~~lir~i 174 (174)
T cd01871 142 AMAK-EIGAVKYLECSALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred HHHH-HCCCCEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 9998-75997899918788959799999999519