HHsearch alignment for GI: 254780484 and conserved domain: cd01875
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.49 E-value=4.9e-13 Score=94.06 Aligned_cols=161 Identities=11% Similarity=0.089 Sum_probs=86.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 3 ~~KivlvGd~~VGKTsli~r~~~~~F~~--~y~pti~~~-----~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~~----- 70 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDN-----YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTL----- 70 (191)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEE-----EEEEEEECCEEEEEEEEECCCCCCHHHHHHH-----
T ss_conf 1899999999989999999997299998--646621000-----4678999999999999858887003567787-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHHHHH---------HH
Q ss_conf 89987777664200000112235788--75454554321--0257532212222111102468999999---------99
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQETLEK---------TK 175 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~---------~~ 175 (212)
T Consensus 71 -----~~---~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg 142 (191)
T cd01875 71 -----SY---PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQG 142 (191)
T ss_pred -----HH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHH
T ss_conf -----74---4786899998579778899999999999997096997899988801023457788877641375569999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99753136898689998888899899999999872
Q gi|254780484|r 176 YLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 176 ~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 143 ~~~a~-~~~~~~y~EtSAkt~~nV~e~F~~l~k~i 176 (191)
T cd01875 143 GALAK-QIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHH-HHCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999-80998899906898969899999999998