HHsearch alignment for GI: 254780484 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.49  E-value=4.9e-13  Score=94.06  Aligned_cols=161  Identities=11%  Similarity=0.089  Sum_probs=86.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r   29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG  108 (212)
Q Consensus        29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~  108 (212)
T Consensus         3 ~~KivlvGd~~VGKTsli~r~~~~~F~~--~y~pti~~~-----~~~~~~i~~~~v~l~iwDtaG~e~~~~~~~~-----   70 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDN-----YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTL-----   70 (191)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEE-----EEEEEEECCEEEEEEEEECCCCCCHHHHHHH-----
T ss_conf             1899999999989999999997299998--646621000-----4678999999999999858887003567787-----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHHHHH---------HH
Q ss_conf             89987777664200000112235788--75454554321--0257532212222111102468999999---------99
Q gi|254780484|r  109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQETLEK---------TK  175 (212)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~---------~~  175 (212)
T Consensus        71 -----~~---~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg  142 (191)
T cd01875          71 -----SY---PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQG  142 (191)
T ss_pred             -----HH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHH
T ss_conf             -----74---4786899998579778899999999999997096997899988801023457788877641375569999


Q ss_pred             HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99753136898689998888899899999999872
Q gi|254780484|r  176 YLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       176 ~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       143 ~~~a~-~~~~~~y~EtSAkt~~nV~e~F~~l~k~i  176 (191)
T cd01875         143 GALAK-QIHAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             HHHHH-HHCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             99999-80998899906898969899999999998