HHsearch alignment for GI: 254780484 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.96 E-value=7.8e-29 Score=184.90 Aligned_cols=163 Identities=22% Similarity=0.271 Sum_probs=110.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 76686899974899889899999738973798738884145212026655567850896499997600101112244789
Q gi|254780484|r 26 KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD 105 (212)
Q Consensus 26 ~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 105 (212)
T Consensus 38 ~~g~p~VaivG~PNvGKSTLlN~L~g~~~--~v~~~~~tT~d~~~~-----~i~~~~~~~i~l~DT~G~i~~~p-~~lie 109 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADV--YAEDQLFATLDPTTR-----RLRLPDGREVLLTDTVGFIRDLP-HQLVE 109 (204)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHCCCC--EEECCCCCCCCCEEE-----EEEECCCCEEEEEECCCCCCCCC-HHHHH
T ss_conf 45998799988999989999999948996--341567764576366-----89956997799983686446783-78999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 888899877776642000001122357887545----4554321025753221222211110246899999999997531
Q gi|254780484|r 106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQID----QDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY 181 (212)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~ 181 (212)
T Consensus 110 ~~~~----tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~~~---------- 175 (204)
T cd01878 110 AFRS----TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERL---------- 175 (204)
T ss_pred HHHH----HHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH----------
T ss_conf 9999----99999739899999979985366779999999998065557607888670479957589999----------
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 36898689998888899899999999872
Q gi|254780484|r 182 PTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 182 ~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 176 ~~~~~~~i~ISA~~g~Gid~L~~~I~e~L 204 (204)
T cd01878 176 EAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 70899879998868949999999999559