HHsearch alignment for GI: 254780484 and conserved domain: cd01878

>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.96  E-value=7.8e-29  Score=184.90  Aligned_cols=163  Identities=22%  Similarity=0.271  Sum_probs=110.7

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             76686899974899889899999738973798738884145212026655567850896499997600101112244789
Q gi|254780484|r   26 KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD  105 (212)
Q Consensus        26 ~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~  105 (212)
T Consensus        38 ~~g~p~VaivG~PNvGKSTLlN~L~g~~~--~v~~~~~tT~d~~~~-----~i~~~~~~~i~l~DT~G~i~~~p-~~lie  109 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADV--YAEDQLFATLDPTTR-----RLRLPDGREVLLTDTVGFIRDLP-HQLVE  109 (204)
T ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHCCCC--EEECCCCCCCCCEEE-----EEEECCCCEEEEEECCCCCCCCC-HHHHH
T ss_conf             45998799988999989999999948996--341567764576366-----89956997799983686446783-78999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             888899877776642000001122357887545----4554321025753221222211110246899999999997531
Q gi|254780484|r  106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQID----QDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY  181 (212)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~  181 (212)
T Consensus       110 ~~~~----tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~~~----------  175 (204)
T cd01878         110 AFRS----TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERL----------  175 (204)
T ss_pred             HHHH----HHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH----------
T ss_conf             9999----99999739899999979985366779999999998065557607888670479957589999----------


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             36898689998888899899999999872
Q gi|254780484|r  182 PTAHPEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       182 ~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       176 ~~~~~~~i~ISA~~g~Gid~L~~~I~e~L  204 (204)
T cd01878         176 EAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             HHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             70899879998868949999999999559