HHsearch alignment for GI: 254780484 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=1.3e-18 Score=126.17 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=110.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCE--EEECCCCCEEEECC-------------------EEEEEEEEEE--------EE
Q ss_conf 8999748998898999997389737--98738884145212-------------------0266555678--------50
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNL--ARTSNAPGRTQHLN-------------------FFVPKDFSNL--------KN 81 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~--a~~~~~p~tt~~~~-------------------~~~~~~~~~~--------~~ 81 (212)
T Consensus 2 Ni~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er-~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELER-NITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred EEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCC
T ss_conf 699998857879999999708512440788867-7603111456666511121223101111012442145314565431
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 89649999760010111224478988889987777664200000112235788-75454554321025753-22122221
Q gi|254780484|r 82 NLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGV-KQIDQDVFSFLDKKAVS-YQIVLTKI 159 (212)
Q Consensus 82 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~v~nK~ 159 (212)
T Consensus 81 ~~r~~tiiD~PGH~df~-------------~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKm 147 (203)
T cd01888 81 LVRHVSFVDCPGHEILM-------------ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred CEEEEEEEECCCHHHHH-------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 12479998689879999-------------99997664347668986436677507799999999984998636775077
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 111024689999999999753136898689998888899899999999872
Q gi|254780484|r 160 DKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 160 D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 148 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~i 198 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 778867899999999998552168998599914788979999999998678