HHsearch alignment for GI: 254780484 and conserved domain: cd01892

>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.50  E-value=2e-13  Score=96.36  Aligned_cols=161  Identities=12%  Similarity=0.031  Sum_probs=90.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             68689997489988989999973897379873888414521202665556785089649999760010111224478988
Q gi|254780484|r   28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSW  107 (212)
Q Consensus        28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~  107 (212)
T Consensus         3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~-~~~y~~Ti~~~~----~~k~v~v~g~~~~L~i~Dt~g~e~~~~l~~~~---   74 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRY----AVNTVEVYGQEKYLILREVGEDEVAILLNDAE---   74 (169)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEE----EEEEEEECCEEEEEEEEECCCCHHHHHHHHHH---
T ss_conf             0899999999998899999999649998-666567546618----99999989999999998556532355665887---


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8899877776642000001122357887--54545543210257532212222111102468999999999975313689
Q gi|254780484|r  108 GGLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH  185 (212)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  185 (212)
T Consensus        75 ----------~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~--~~e~~~~a~~~--~~  140 (169)
T cd01892          75 ----------LAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRY--EVQPDEFCRKL--GL  140 (169)
T ss_pred             ----------HCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHHHC--CC
T ss_conf             ----------54698899999799878999999999970056898189998865542037546--77699999983--99


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8689998888899899999999872
Q gi|254780484|r  186 PEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       186 ~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       141 ~~~~e~SAktg~nv~~~F~~la~~a  165 (169)
T cd01892         141 PPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             9666998327989899999999997