HHsearch alignment for GI: 254780484 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=2e-13 Score=96.36 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=90.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 68689997489988989999973897379873888414521202665556785089649999760010111224478988
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSW 107 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 107 (212)
T Consensus 3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~-~~~y~~Ti~~~~----~~k~v~v~g~~~~L~i~Dt~g~e~~~~l~~~~--- 74 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRY----AVNTVEVYGQEKYLILREVGEDEVAILLNDAE--- 74 (169)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEE----EEEEEEECCEEEEEEEEECCCCHHHHHHHHHH---
T ss_conf 0899999999998899999999649998-666567546618----99999989999999998556532355665887---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8899877776642000001122357887--54545543210257532212222111102468999999999975313689
Q gi|254780484|r 108 GGLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 75 ----------~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~--~~e~~~~a~~~--~~ 140 (169)
T cd01892 75 ----------LAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRY--EVQPDEFCRKL--GL 140 (169)
T ss_pred ----------HCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHHHC--CC
T ss_conf ----------54698899999799878999999999970056898189998865542037546--77699999983--99
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8689998888899899999999872
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 141 ~~~~e~SAktg~nv~~~F~~la~~a 165 (169)
T cd01892 141 PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 9666998327989899999999997