HHsearch alignment for GI: 254780484 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.94 E-value=4.9e-26 Score=168.80 Aligned_cols=156 Identities=20% Similarity=0.244 Sum_probs=102.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~--~~v~~ypfTT~~pi------~g~~~~~~~~iqlvDtPGli~~a~~g~g~g~-~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCV------PGVLEYKGAKIQLLDLPGIIEGAADGKGRGR-QVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCCCE------EEEEEECCEEEEEEECCCCCCCCCCCCCHHH-HHH
T ss_conf 59999999999999999997899--54369897875747------7799989989999967300246333320689-999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHH----------------------------------------------HHHHH
Q ss_conf 98777766420000011223578875454----------------------------------------------55432
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVKQIDQ----------------------------------------------DVFSF 144 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~ 144 (212)
T Consensus 73 ~~-----~r~aD~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e 147 (233)
T cd01896 73 AV-----ARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILRE 147 (233)
T ss_pred HH-----HHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99-----8758999999847982667899999998605110357876257771358678604566666888999999998
Q ss_pred ----------------------H--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
Q ss_conf ----------------------1--0257532212222111102468999999999975313689868999888889989
Q gi|254780484|r 145 ----------------------L--DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIE 200 (212)
Q Consensus 145 ----------------------~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~Gi~ 200 (212)
T Consensus 148 ~~i~~a~v~i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee~~~----~--------~~~~~~i~ISA~~g~gld 215 (233)
T cd01896 148 YKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----L--------ARQPNSVVISAEKGLNLD 215 (233)
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH----H--------HCCCCEEEEECCCCCCHH
T ss_conf 2767643786057888898998735767673799997403699899998----6--------467985999888898989
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999987287
Q gi|254780484|r 201 VLRKAILETINY 212 (212)
Q Consensus 201 eL~~~I~~~l~~ 212 (212)
T Consensus 216 ~L~~~I~~~L~l 227 (233)
T cd01896 216 ELKERIWDKLGL 227 (233)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998396