HHsearch alignment for GI: 254780484 and conserved domain: cd03229
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0016 Score=39.42 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 887668689997489988989999973897
Q gi|254780484|r 24 LPKAGPPEIAFSGRSNVGKSSLINILVNRK 53 (212)
Q Consensus 24 ~P~~~~p~VaivG~~NvGKSSLiNaL~g~~ 53 (212)
T Consensus 23 i~~Ge--~~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 23 IEAGE--IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred ECCCC--EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 88998--99999999983999999998599