HHsearch alignment for GI: 254780484 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.80 E-value=0.0013 Score=39.85 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899974899889899999738
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVN 51 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g 51 (212)
T Consensus 24 itaivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899998999999999999863