HHsearch alignment for GI: 254780484 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00058 Score=41.90 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997489988989999973897
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRK 53 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~ 53 (212)
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899982999999996676