HHsearch alignment for GI: 254780484 and conserved domain: cd04104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55 E-value=9.1e-14 Score=98.27 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=103.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC----CCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389----73798738884145212026655567850896499997600101112244789
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNR----KNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD 105 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~----~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 105 (212)
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~-~~~~-------Y~~p~~pnv~lwDlPG~Gt~~f~~~~Yl 73 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTM-KRTP-------YPHPKFPNVTLWDLPGIGSTAFPPDDYL 73 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCEE-------CCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 1799955899868999999868898877758888874677-8620-------4799999876972899998765989999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHH-
Q ss_conf 888899877776642000001122357887545455432102575322122221111024---------6899999999-
Q gi|254780484|r 106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPT---------TAQETLEKTK- 175 (212)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~---------~~~~~~~~~~- 175 (212)
T Consensus 74 ~~~----------~~~~yD~fiiiss~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~ 143 (197)
T cd04104 74 EEM----------KFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRD 143 (197)
T ss_pred HHC----------CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf 865----------8554578999838864142699999999809928999861214000566378766599999999999
Q ss_pred ---HHHHHCCCCCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf ---99753136898689998888--899899999999872
Q gi|254780484|r 176 ---YLIRNYPTAHPEVIPTSSVK--RKGIEVLRKAILETI 210 (212)
Q Consensus 176 ---~~~~~~~~~~~~i~~vSA~~--g~Gi~eL~~~I~~~l 210 (212)
T Consensus 144 ~c~~~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~L 183 (197)
T cd04104 144 NCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999869999998999379822077689999999980