HHsearch alignment for GI: 254780484 and conserved domain: cd04104

>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55  E-value=9.1e-14  Score=98.27  Aligned_cols=163  Identities=20%  Similarity=0.249  Sum_probs=103.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC----CCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389----73798738884145212026655567850896499997600101112244789
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNR----KNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD  105 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~----~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~  105 (212)
T Consensus         2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~-~~~~-------Y~~p~~pnv~lwDlPG~Gt~~f~~~~Yl   73 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTM-KRTP-------YPHPKFPNVTLWDLPGIGSTAFPPDDYL   73 (197)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCEE-------CCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf             1799955899868999999868898877758888874677-8620-------4799999876972899998765989999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHH-
Q ss_conf             888899877776642000001122357887545455432102575322122221111024---------6899999999-
Q gi|254780484|r  106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPT---------TAQETLEKTK-  175 (212)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~---------~~~~~~~~~~-  175 (212)
T Consensus        74 ~~~----------~~~~yD~fiiiss~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~  143 (197)
T cd04104          74 EEM----------KFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRD  143 (197)
T ss_pred             HHC----------CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf             865----------8554578999838864142699999999809928999861214000566378766599999999999


Q ss_pred             ---HHHHHCCCCCCCEEEEECCC--CCCHHHHHHHHHHHH
Q ss_conf             ---99753136898689998888--899899999999872
Q gi|254780484|r  176 ---YLIRNYPTAHPEVIPTSSVK--RKGIEVLRKAILETI  210 (212)
Q Consensus       176 ---~~~~~~~~~~~~i~~vSA~~--g~Gi~eL~~~I~~~l  210 (212)
T Consensus       144 ~c~~~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~L  183 (197)
T cd04104         144 NCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999869999998999379822077689999999980