>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

Probab=99.55 E-value=3.6e-14 Score=100.60 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=86.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888 Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212) Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212) T Consensus 6 ~~KIvlvGd~~VGKTSli~r~~~~~F~~~--~~~Tig~d~----~~k~v~i~~~~v~l~iwDtaGqe~~~~l~~~~~~-- 77 (199) T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDF----KIRTVEINGERVKLQIWDTAGQERFRTITSTYYR-- 77 (199) T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCC--CCCCCCEEE----EEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHH-- T ss_conf 77999999799888999999950999998--689755587----8999999999999999989998123535266642-- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 89987777664200000112235788--75454554321--025753221222211110246899999999997531368 Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTA 184 (212) Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 184 (212) T Consensus 78 -----------~a~~~ilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~--~e~~~~a~~~--- 140 (199) T cd04110 78 -----------GTHGVIVVYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERKVVET--EDAYKFAGQM--- 140 (199) T ss_pred -----------CCCCCEEEEECCCHHHHHHHH-HHHHHHHHHCCCCCEEEEEECCCHHHHCCCCH--HHHHHHHHHC--- T ss_conf -----------465423897179889999999-99999997599875799988554475469999--9999999986--- Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 98689998888899899999999872 Q gi|254780484|r 185 HPEVIPTSSVKRKGIEVLRKAILETI 210 (212) Q Consensus 185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212) T Consensus 141 ~~~f~E~SAktg~nV~e~F~~i~~~i 166 (199) T cd04110 141 GISLFETSAKENINVEEMFNCITELV 166 (199) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 99799986899929899999999999

HHsearch alignment for GI: 254780484 and conserved domain: cd04110