HHsearch alignment for GI: 254780484 and conserved domain: cd04115
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.49 E-value=2.1e-13 Score=96.22 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=87.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~~F~--~~~~~Tig~d----~~~k~i~v~~~~v~l~iwDtaG~e~~~~s-------- 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP--ERTEATIGVD----FRERTVEIDGERIKVQLWDTAGQERFRKS-------- 67 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCEEEE----EEEEEEEECCEEEEEEEEECCCCHHHHHH--------
T ss_conf 699999997997799999999539889--9878863078----78999999999999999977885305677--------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHH---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89987777664200000112235788--7545---455432102575322122221111024689999999999753136
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQID---QDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPT 183 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 183 (212)
T Consensus 68 -~~~~~~---~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs--~~e~~~~a~~~-- 139 (170)
T cd04115 68 -MVQHYY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP--TDLAQRFADAH-- 139 (170)
T ss_pred -HHHHHH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCC--HHHHHHHHHHC--
T ss_conf -789984---5773579995047476799999999999986588899799999982134117879--99999999977--
Q ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHHH
Q ss_conf 89868999888---8899899999999872
Q gi|254780484|r 184 AHPEVIPTSSV---KRKGIEVLRKAILETI 210 (212)
Q Consensus 184 ~~~~i~~vSA~---~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 140 -~~~~~E~SAK~~~~~~nV~~~F~~la~~i 168 (170)
T cd04115 140 -SMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred -CCEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf -99999988899851708899999999996