HHsearch alignment for GI: 254780484 and conserved domain: cd04119

>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.53  E-value=1e-13  Score=98.03  Aligned_cols=157  Identities=14%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         1 lKivvvG~~~vGKTSLi~r~~~~~f~~~--y~pTig~~~----~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~-------   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDY----GVKKVSVRNKEVRVNFFDLSGHPEYLEVRN-------   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCEEE----EEEEEEECCEEEEEEEEECCCCHHHHHHHH-------
T ss_conf             9899999599568999999963999998--589765577----799999999999999998999764789999-------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCHHH-----HHHHHHH----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99877776642000001122357887545-----4554321----02575322122221111024689999999999753
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHGVKQID-----QDVFSFL----DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN  180 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~  180 (212)
T Consensus        68 ---~~~---~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~--~~~~~~a~~  139 (168)
T cd04119          68 ---EFY---KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE--DEGRLWAES  139 (168)
T ss_pred             ---HHH---HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCH--HHHHHHHHH
T ss_conf             ---998---747788999508974448999999999999824534566862999854034442578899--999999998


Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             136898689998888899899999999872
Q gi|254780484|r  181 YPTAHPEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       181 ~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       140 ---~~~~~~E~Sak~g~~V~e~F~~l~~~i  166 (168)
T cd04119         140 ---KGFKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             ---CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             ---699899988577908899999999997