HHsearch alignment for GI: 254780484 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.53 E-value=1e-13 Score=98.03 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=86.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~~f~~~--y~pTig~~~----~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~------- 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDY----GVKKVSVRNKEVRVNFFDLSGHPEYLEVRN------- 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCEEE----EEEEEEECCEEEEEEEEECCCCHHHHHHHH-------
T ss_conf 9899999599568999999963999998--589765577----799999999999999998999764789999-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHH-----HHHHHHH----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99877776642000001122357887545-----4554321----02575322122221111024689999999999753
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVKQID-----QDVFSFL----DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN 180 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~ 180 (212)
T Consensus 68 ---~~~---~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~--~~~~~~a~~ 139 (168)
T cd04119 68 ---EFY---KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE--DEGRLWAES 139 (168)
T ss_pred ---HHH---HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCH--HHHHHHHHH
T ss_conf ---998---747788999508974448999999999999824534566862999854034442578899--999999998
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 136898689998888899899999999872
Q gi|254780484|r 181 YPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 181 ~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 140 ---~~~~~~E~Sak~g~~V~e~F~~l~~~i 166 (168)
T cd04119 140 ---KGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ---699899988577908899999999997