HHsearch alignment for GI: 254780484 and conserved domain: cd04124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.59 E-value=1.5e-14 Score=102.74 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=85.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 iKivllGd~~VGKTsli~r~~~~~f~~~--~~~T----ig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~~~y----- 69 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ--QLST----YALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASY----- 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCC--CCCC----CCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHH-----
T ss_conf 9899999899678999999980977997--2665----4157999999999999999999799984343246997-----
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9987777664200000112235788754-54554321--02575322122221111024689999999999753136898
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVKQI-DQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHP 186 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (212)
T Consensus 70 -----~---~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~-~~~~----~~~~a~---~~~~ 133 (161)
T cd04124 70 -----Y---HKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQK----KFNFAE---KHNL 133 (161)
T ss_pred -----H---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH-HHHH----HHHHHH---HCCC
T ss_conf -----3---5687679999689778899999999999986869989999997117742-5899----999999---8699
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 689998888899899999999872
Q gi|254780484|r 187 EVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 187 ~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 134 ~f~etSAk~g~nV~e~F~~l~~~~ 157 (161)
T cd04124 134 PLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199990783809799999999999