HHsearch alignment for GI: 254780484 and conserved domain: cd04126
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.53 E-value=1.4e-13 Score=97.29 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=86.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 lKivllGd~~VGKTsl~~rf~~~~F-~--~~~~Tig~~--~------~~k~~~~~~l~IwDTaGqE~f~sl~~~y~---- 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF-K--DTVSTVGGA--F------YLKQWGPYNISIWDTAGREQFHGLGSMYC---- 65 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC-C--CCCCCCCEE--E------EEEECCEEEEEEEECCCCCCCCCCHHHHH----
T ss_conf 9899999999889999999972989-9--988871368--9------99876478899994798622433268885----
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC--HHHH--HHHHHHCCCCCCCCCCCCCCCCCCHH-----------------HHH
Q ss_conf 99877776642000001122357887--5454--55432102575322122221111024-----------------689
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVK--QIDQ--DVFSFLDKKAVSYQIVLTKIDKLSPT-----------------TAQ 168 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~v~nK~D~~~~~-----------------~~~ 168 (212)
T Consensus 66 ---------r~a~~~ilvyDit~~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~ 136 (220)
T cd04126 66 ---------RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQ 136 (220)
T ss_pred ---------CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------67988999997989899999999999999847999808999887121364344333333322344100354
Q ss_pred HHHHHHHHHHHHC-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9999999997531-----------36898689998888899899999999872
Q gi|254780484|r 169 ETLEKTKYLIRNY-----------PTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 169 ~~~~~~~~~~~~~-----------~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 137 Vs~ee~~~~a~~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i 189 (220)
T cd04126 137 VTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48999999999850220222111124577699914789979899999999999