HHsearch alignment for GI: 254780484 and conserved domain: cd04132

>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.60  E-value=7.9e-15  Score=104.37  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=84.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL  110 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~  110 (212)
T Consensus         2 KivlvGd~~VGKTsli~r~~~~~F~--~~~~pTi--~~~--~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~------   69 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTV--FEN--YVTNIQGPNGKIIELALWDTAGQEEYDRLRPLS------   69 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCE--EEE--EEEEEEEECCEEEEEEEEECCCCCCCCCCHHHH------
T ss_conf             8999994997699999999639899--9758966--479--999999549989999999699971105343445------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHCCCC
Q ss_conf             98777766420000011223578--875454554321--025753221222211110246899--999999997531368
Q gi|254780484|r  111 IVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQE--TLEKTKYLIRNYPTA  184 (212)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~  184 (212)
T Consensus        70 ----~---~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~--~~  140 (187)
T cd04132          70 ----Y---PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK--QG  140 (187)
T ss_pred             ----H---HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHH--CC
T ss_conf             ----3---00348889503687677999999999999986899997999987221221223765789999999998--59


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             98689998888899899999999872
Q gi|254780484|r  185 HPEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       141 ~~~y~EtSAk~g~nV~e~F~~l~~~i  166 (187)
T cd04132         141 AFAYLECSAKTMENVEEVFDTAIEEA  166 (187)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             97899957688929899999999999