HHsearch alignment for GI: 254780484 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.60 E-value=7.9e-15 Score=104.37 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=84.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F~--~~~~pTi--~~~--~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~~------ 69 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTV--FEN--YVTNIQGPNGKIIELALWDTAGQEEYDRLRPLS------ 69 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCE--EEE--EEEEEEEECCEEEEEEEEECCCCCCCCCCHHHH------
T ss_conf 8999994997699999999639899--9758966--479--999999549989999999699971105343445------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHCCCC
Q ss_conf 98777766420000011223578--875454554321--025753221222211110246899--999999997531368
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQE--TLEKTKYLIRNYPTA 184 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~ 184 (212)
T Consensus 70 ----~---~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~--~~ 140 (187)
T cd04132 70 ----Y---PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK--QG 140 (187)
T ss_pred ----H---HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHH--CC
T ss_conf ----3---00348889503687677999999999999986899997999987221221223765789999999998--59
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 98689998888899899999999872
Q gi|254780484|r 185 HPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 141 ~~~y~EtSAk~g~nV~e~F~~l~~~i 166 (187)
T cd04132 141 AFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 97899957688929899999999999