HHsearch alignment for GI: 254780484 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=8.8e-14 Score=98.37 Aligned_cols=160 Identities=12% Similarity=0.114 Sum_probs=86.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F-~~-~y~~Ti--~~~~---~~~~~v~~~~v~l~iwDTaGqe~~~~i~~~------- 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQ-VYEPTV--FENY---VHDIFVDGLHIELSLWDTAGQEEFDRLRSL------- 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC-CCCCCE--EEEE---EEEEEECCEEEEEEEEECCCCCCCCHHHHH-------
T ss_conf 899999799769999999970999-99-868837--8999---999999999999999847785000035567-------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HH
Q ss_conf 98777766420000011223578--875454554321--02575322122221111024689999999999-------75
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYL-------IR 179 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~-------~~ 179 (212)
T Consensus 68 ---~y---~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~ 141 (189)
T cd04134 68 ---SY---ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred ---HH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf ---64---378645999978987899999999999999749799789999880046532356777663046658999999
Q ss_pred H-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 3-136898689998888899899999999872
Q gi|254780484|r 180 N-YPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 180 ~-~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 142 ~Ak~~~~~~y~EtSAkt~~nV~e~F~~lar~~ 173 (189)
T cd04134 142 VAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99982997899968067949899999999999