HHsearch alignment for GI: 254780484 and conserved domain: cd04135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.47 E-value=2.9e-13 Score=95.39 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=83.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~f~--~~y~pT-i~~----~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~------- 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPT-VFD----HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------- 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCE-EEE----EEEEEEEECCEEEEEEEEECCCCCCCHHHHH-------
T ss_conf 98999998998599999999629899--886885-752----0227999999999999997976403155659-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHH---HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH----------HHHHH
Q ss_conf 9987777664200000112235788--754---54554321025753221222211110246899----------99999
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGV--KQI---DQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQE----------TLEKT 174 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~----------~~~~~ 174 (212)
T Consensus 67 ---~~~---~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~-~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg 139 (174)
T cd04135 67 ---LSY---PMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred ---HHH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHH
T ss_conf ---985---5787678984379778899999999999998-684998899968523004434554530045766399999
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 999753136898689998888899899999999872
Q gi|254780484|r 175 KYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 175 ~~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 140 ~~~A~~--~g~~~f~E~SAkt~~nV~e~F~~~i~~i 173 (174)
T cd04135 140 QKLAKE--IGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 999997--7998999905487949899999999997