HHsearch alignment for GI: 254780484 and conserved domain: cd04139

>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62  E-value=3.4e-15  Score=106.51  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=88.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL  110 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~  110 (212)
T Consensus         2 KvvlvGd~~VGKTsli~r~~~~~F~~--~y~pTi~-~----~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~-------   67 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKA-D----SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDN-------   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCC-C----EEEEEEEECCEEEEEEEEECCCCHHHHHHHHH-------
T ss_conf             79999999988999999997198987--7488544-1----68999999999999999989886624889999-------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCC-----HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9877776642000001122357887-----54545543210257532212222111102468999999999975313689
Q gi|254780484|r  111 IVRYLSERSTLRCVYLLIDCRHGVK-----QIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH  185 (212)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  185 (212)
T Consensus        68 ---~~---~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~--~~e~~~~a~~~---~  136 (164)
T cd04139          68 ---YH---RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS--SEEAANLARQW---G  136 (164)
T ss_pred             ---HH---HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCC--HHHHHHHHHHC---C
T ss_conf             ---88---6376889999779778899999999999986087886369873303233417789--99999999983---9


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8689998888899899999999872
Q gi|254780484|r  186 PEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       186 ~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       137 ~~~~E~SAk~g~nV~~~F~~l~~~i  161 (164)
T cd04139         137 VPYVETSAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             9899982687908899999999999