HHsearch alignment for GI: 254780484 and conserved domain: cd04149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.55 E-value=7.4e-14 Score=98.79 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=89.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 9 ~~kililG~~~sGKTsil~~l~~~~~~-~--~~pTvg--~------~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~----- 72 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-T--TIPTVG--F------NVETVTYKNVKFNVWDVGGQDKIRPLWRH----- 72 (168)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCC-C--CCCCCC--C------EEEEEEECCEEEEEEECCCCCCCCCHHHH-----
T ss_conf 889999999999989999999669987-6--026267--0------07999989889999989999746606576-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHH---HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899877776642000001122357887--5454---55432102575322122221111024689999999999753136
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQ---DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPT 183 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 183 (212)
T Consensus 73 -----y---~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~--l~~~~~ 142 (168)
T cd04149 73 -----Y---YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG--LTRIRD 142 (168)
T ss_pred -----H---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC--HHHHHC
T ss_conf -----4---378866899983776789999999999997145227986999997566777889999999978--765517
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8986899988888998999999998
Q gi|254780484|r 184 AHPEVIPTSSVKRKGIEVLRKAILE 208 (212)
Q Consensus 184 ~~~~i~~vSA~~g~Gi~eL~~~I~~ 208 (212)
T Consensus 143 ~~~~i~~~SA~tG~Gv~e~f~WL~~ 167 (168)
T cd04149 143 RNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9809998068789697999999865