HHsearch alignment for GI: 254780484 and conserved domain: cd04149

>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.55  E-value=7.4e-14  Score=98.79  Aligned_cols=154  Identities=13%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r   29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG  108 (212)
Q Consensus        29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~  108 (212)
T Consensus         9 ~~kililG~~~sGKTsil~~l~~~~~~-~--~~pTvg--~------~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~-----   72 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-T--TIPTVG--F------NVETVTYKNVKFNVWDVGGQDKIRPLWRH-----   72 (168)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCCC-C--CCCCCC--C------EEEEEEECCEEEEEEECCCCCCCCCHHHH-----
T ss_conf             889999999999989999999669987-6--026267--0------07999989889999989999746606576-----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHH---HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899877776642000001122357887--5454---55432102575322122221111024689999999999753136
Q gi|254780484|r  109 GLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQ---DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPT  183 (212)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~  183 (212)
T Consensus        73 -----y---~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~--l~~~~~  142 (168)
T cd04149          73 -----Y---YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLG--LTRIRD  142 (168)
T ss_pred             -----H---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC--HHHHHC
T ss_conf             -----4---378866899983776789999999999997145227986999997566777889999999978--765517


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             8986899988888998999999998
Q gi|254780484|r  184 AHPEVIPTSSVKRKGIEVLRKAILE  208 (212)
Q Consensus       184 ~~~~i~~vSA~~g~Gi~eL~~~I~~  208 (212)
T Consensus       143 ~~~~i~~~SA~tG~Gv~e~f~WL~~  167 (168)
T cd04149         143 RNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf             9809998068789697999999865