HHsearch alignment for GI: 254780484 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.60 E-value=1e-14 Score=103.68 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 1 Kil~lG~~~~GKTsll~~~~~~~~---~~~~pTig--~~------~~~i~~~~~~~~iwD~~G~e~~r~~~~~------- 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV---VTTIPTIG--FN------VETVTYKNLKFQVWDLGGQTSIRPYWRC------- 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC---CCCCCCCC--CC------EEEEEECCEEEEEEECCCCCCCCHHHHH-------
T ss_conf 999999999989999999970996---77578488--24------6999989889999967986244627887-------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCH--H---HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98777766420000011223578875--4---545543210257532212222111102468999999999975313689
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVKQ--I---DQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 63 ---y---~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~~~~~~ 134 (158)
T cd04151 63 ---Y---YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL--SELKDRT 134 (158)
T ss_pred ---H---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH--HHHHCCC
T ss_conf ---4---6678899999745787899999999999983465369819999976677657799999999859--8741699
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 868999888889989999999987
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILET 209 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 135 ~~~~~tSA~tG~gV~e~f~wL~~t 158 (158)
T cd04151 135 WSIFKTSAIKGEGLDEGMDWLVNT 158 (158)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689996787893999999998569