HHsearch alignment for GI: 254780484 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.49 E-value=1.3e-13 Score=97.37 Aligned_cols=154 Identities=12% Similarity=0.109 Sum_probs=91.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 1 KIlilGl~~sGKTtil~~l~~~~~~-~--~~pT~G--~~------~~~i~~~~~~l~iwD~gG~~~~r~~w~~Y------ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q--PIPTIG--FN------VETVEYKNLKFTIWDVGGKHKLRPLWKHY------ 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCC-C--CCCCCC--CC------EEEEEECCEEEEEEECCCCCCCCHHHHHH------
T ss_conf 9999998999889999999579968-9--778688--16------69999898899999899972446367875------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHH-----HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 98777766420000011223578875454-----554321025753221222211110246899999999997531-368
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVKQIDQ-----DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY-PTA 184 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~ 184 (212)
T Consensus 64 -------y~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~--l~~~~~~~ 134 (169)
T cd04158 64 -------YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLS--LHKLCCGR 134 (169)
T ss_pred -------CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC--CHHHCCCC
T ss_conf -------557627999998630677999999999997127537984999973556777989999999857--05452699
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 98689998888899899999999872
Q gi|254780484|r 185 HPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 135 ~~~i~~~SA~tG~Gi~e~~~WL~~~i 160 (169)
T cd04158 135 SWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62999555727959899999999999