HHsearch alignment for GI: 254780484 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.71 E-value=8.2e-17 Score=115.80 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=91.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99974899889899999738973798738884145212026655567850896499997600101112244789888899
Q gi|254780484|r 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLI 111 (212)
Q Consensus 32 VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 111 (212)
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg----~~~~~i~~~~~~l~iwD~~Gqe~~~~l~---------- 67 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG----LNIGTIEVGNARLKFWDLGGQESLRSLW---------- 67 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC----EEEEEEEECCEEEEEEECCCCHHHHHHH----------
T ss_conf 99999999888899998875036767776554035313----2689999899999999689878887899----------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHH--HH---HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87777664200000112235788754--54---55432102575322122221111024689999999999753136898
Q gi|254780484|r 112 VRYLSERSTLRCVYLLIDCRHGVKQI--DQ---DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHP 186 (212)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (212)
T Consensus 68 ~~y---~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 68 DKY---YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred HHH---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 874---28987899998668678899999999997511024896299997066766577899999999999998546998
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6899988888998999999998
Q gi|254780484|r 187 EVIPTSSVKRKGIEVLRKAILE 208 (212)
Q Consensus 187 ~i~~vSA~~g~Gi~eL~~~I~~ 208 (212)
T Consensus 145 ~~~~~SAktG~Gv~e~f~wL~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 9999887829498999999965