HHsearch alignment for GI: 254780484 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.23 E-value=3.3e-11 Score=83.53 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=87.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99974899889899999738973798738884145212026655567850896499997600101112244789888899
Q gi|254780484|r 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLI 111 (212)
Q Consensus 32 VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~ 111 (212)
T Consensus 2 ililGLd~aGKTTil~~l~~~~~-~~--~~PT~----G~----~~~~~~~~~~~l~~~DlgG~~~~R------~lW~~-- 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP-KK--VAPTV----GF----TPTKLRLDKYEVCIFDLGGGANFR------GIWVN-- 62 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCCC-CC--CCCCC----CC----CEEEEEECCEEEEEEECCCCHHHH------HHHHH--
T ss_conf 89990089988999999828998-76--50877----73----179999899999999899877888------99998--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHH--HH---HHHHHCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCC
Q ss_conf 877776642000001122357887545--45---543210257532212222111102---4689999999999753136
Q gi|254780484|r 112 VRYLSERSTLRCVYLLIDCRHGVKQID--QD---VFSFLDKKAVSYQIVLTKIDKLSP---TTAQETLEKTKYLIRNYPT 183 (212)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~ 183 (212)
T Consensus 63 Y-----~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~-L~~l~-~~~~ 135 (167)
T cd04161 63 Y-----YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS-LEKLV-NENK 135 (167)
T ss_pred H-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHC-CHHHC-CCCC
T ss_conf 7-----347765799985575889999999999996588778995999988657615899999998819-74240-8998
Q ss_pred CCCCEEEEECCCCCC------HHHHHHHHHH
Q ss_conf 898689998888899------8999999998
Q gi|254780484|r 184 AHPEVIPTSSVKRKG------IEVLRKAILE 208 (212)
Q Consensus 184 ~~~~i~~vSA~~g~G------i~eL~~~I~~ 208 (212)
T Consensus 136 ~~~~I~~csA~tG~G~~~~~~l~eGl~WL~~ 166 (167)
T cd04161 136 SLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CEEEEEECEEECCCCCCCCCCHHHHHHHHHC
T ss_conf 6379995764448887876631549989864