HHsearch alignment for GI: 254780484 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.12 E-value=3.9e-10 Score=77.42 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=86.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~~~~--~~~PT~G--f~------~~~i~~~~~~l~~wDlgGq~~~R~------~W~~Y 64 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE--SVVPTTG--FN------SVAIPTQDAIMELLEIGGSQNLRK------YWKRY 64 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCC--CC------EEEEEECCEEEEEEECCCHHHHHH------HHHHH
T ss_conf 99999679998999999981699876--5356327--74------699998999999985375288865------69987
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHH--HHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CC
Q ss_conf 9877776642000001122357887545--4554321-02575322122221111024689999999999753136--89
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVKQID--QDVFSFL-DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPT--AH 185 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~ 185 (212)
T Consensus 65 -------~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~----ei~~~L~L~~i~~~r 133 (164)
T cd04162 65 -------LSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ----EIHKELELEPIARGR 133 (164)
T ss_pred -------HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHH----HHHHHCCCCCCCCCC
T ss_conf -------117758999995688889999999999997087998699998632433699999----999866994637999
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 868999888889989999999987
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILET 209 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 134 ~w~iq~~s~~g~gl~~~~~~l~~~ 157 (164)
T cd04162 134 RWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 889971104799858999999999